Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AL157394.1-201ENST00000562983 1224 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC034105.3-201ENST00000565294 442 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 KC877982.1-201ENST00000602313 470 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC073114.1-201ENST00000612027 490 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC090970.3-201ENST00000612566 866 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC093831.2-201ENST00000624393 3427 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 RNU6-525P-201ENST00000363685 104 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 SNORD116-2-201ENST00000384274 95 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 SNORD116-6-201ENST00000384711 96 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AL359634.1-202ENST00000404721 284 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AC100870.1-201ENST00000522035 505 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AC007115.1-201ENST00000546853 234 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 HMGN1P30-201ENST00000589286 268 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AC010620.1-201ENST00000601088 1102 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AL359999.1-201ENST00000604513 294 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AL033523.1-201ENST00000605153 153 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AC121334.2-201ENST00000605387 271 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 uc_338.12-201ENST00000616344 181 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AL603839.4-201ENST00000624658 1005 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AC008264.2-201ENST00000610193 3731 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AC008669.1-201ENST00000565823 2178 ntBASIC3.14□□□□□ -1.91
CPSF3Q9UKF6 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC092104.1-201ENST00000497346 1441 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC022336.2-201ENST00000568966 2538 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 ELL2P3-201ENST00000457883 1602 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 RNY3P13-201ENST00000365542 102 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 Z85995.1-201ENST00000415547 335 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AL645937.1-202ENST00000421799 937 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 RPL23AP58-201ENST00000440453 469 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 PGBD4P3-201ENST00000440731 581 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AL135938.1-201ENST00000443141 297 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 COX6CP2-201ENST00000444980 225 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 MTATP6P26-201ENST00000445926 662 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 RPL21P41-201ENST00000459863 264 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 RPS26P21-201ENST00000475397 348 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AL135752.1-201ENST00000479477 471 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 LARP1BP2-201ENST00000486594 519 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC097462.2-201ENST00000504623 481 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 HIGD1AP13-201ENST00000509878 289 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC114797.1-201ENST00000514003 728 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 RNU6-390P-201ENST00000516259 103 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 SCARNA13-201ENST00000516672 275 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 RN7SKP282-201ENST00000516824 299 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC009977.1-201ENST00000586015 570 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AP000860.1-201ENST00000605250 559 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC068276.1-201ENST00000605793 379 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AC025594.3-201ENST00000613068 790 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 SNHG22-203ENST00000617833 660 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 AL137790.1-201ENST00000634283 177 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.13□□□□□ -1.91
CPSF3Q9UKF6 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RNU4-1-201ENST00000363925 141 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RNY3P10-201ENST00000384764 102 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RNU6-278P-201ENST00000390945 109 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 FCF1P10-201ENST00000407590 479 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 Y_RNA.598-201ENST00000410480 95 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 SPA17P1-201ENST00000416656 452 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 USP12PX-201ENST00000432383 1057 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 CBWD4P-201ENST00000445695 655 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AP003467.2-201ENST00000520175 319 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 200.2 ms