Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC087441.2-201ENST00000529141 262 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 AC008033.2-201ENST00000542626 177 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 TRAV28-201ENST00000557548 323 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 AC072026.1-201ENST00000605023 201 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 AC090132.2-201ENST00000615881 347 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 ADAM24P-201ENST00000398655 2101 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 OR4F13P-202ENST00000560066 2054 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RNA5SP455-201ENST00000365190 119 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 CRP-203ENST00000368111 512 ntTSL 3 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RNU6-843P-201ENST00000384454 104 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RNU6-102P-201ENST00000384485 104 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RNU6-125P-201ENST00000384505 107 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 AL078599.1-201ENST00000402075 293 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RNU5A-5P-201ENST00000411054 116 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RPS12P23-201ENST00000419579 400 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RPL17P36-201ENST00000420302 549 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 OR2AM1P-201ENST00000422137 422 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 RPS15AP7-201ENST00000439294 405 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 AL353705.4-201ENST00000449661 238 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 AL591623.2-201ENST00000449978 222 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 snoU13.24-201ENST00000458998 104 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 MIR4782-201ENST00000577987 79 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 SNRPGP15-201ENST00000600149 222 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 AL162424.1-201ENST00000602325 221 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 AC011476.5-201ENST00000615594 130 ntBASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.53□□□□□ -1.52
LIMD1Q9UGP4 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 RN7SKP186-201ENST00000365371 303 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 RNA5SP87-201ENST00000384155 118 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 MIR153-2-201ENST00000385225 87 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 Y_RNA.626-201ENST00000411288 95 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 MRPS21P2-201ENST00000424704 264 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 snoU109.2-201ENST00000459316 135 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 RN7SL385P-201ENST00000468873 276 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC097484.1-201ENST00000471148 389 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 RPL23AP75-201ENST00000491601 451 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 RPL23AP49-201ENST00000492925 468 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC137627.1-201ENST00000545761 289 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 UBE2Q2P8-201ENST00000560644 102 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 RPL23AP88-201ENST00000605759 454 ntBASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
LIMD1Q9UGP4 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AL353743.1-202ENST00000431724 1695 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 MIR133A2-201ENST00000347538 102 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RN7SKP185-201ENST00000362813 326 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 Y_RNA.76-201ENST00000362931 109 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 Y_RNA.122-201ENST00000363331 96 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RNU6-527P-201ENST00000363425 104 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RNU6-1020P-201ENST00000363684 107 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RNU6-682P-201ENST00000363843 106 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 SNORA62-201ENST00000365493 153 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RNU6-1286P-201ENST00000383871 107 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RNU1-139P-201ENST00000391307 165 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RNU6-1140P-201ENST00000410517 106 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AL606753.1-201ENST00000427435 87 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AC098831.1-201ENST00000440661 216 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms