Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNA5SP119-201ENST00000362715 117 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 RNA5SP124-201ENST00000362739 110 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 SNORA9-201ENST00000384215 133 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 RNU6-45P-201ENST00000384471 107 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 SNORD3H-201ENST00000384486 214 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 MIR1911-201ENST00000410783 80 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AL591212.2-201ENST00000433923 257 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 RPS29P19-201ENST00000479709 171 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AC021146.3-201ENST00000511911 260 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AC026782.1-201ENST00000512952 449 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AP003122.3-201ENST00000526316 255 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AC004817.2-201ENST00000561794 651 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 MIR5692A1-201ENST00000580523 69 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 SNORD84-203ENST00000584275 78 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 MIR6500-201ENST00000622700 86 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 PRO1804-201ENST00000623780 2050 ntBASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 EFTUD1P2-201ENST00000514817 1603 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 Y_RNA.463-201ENST00000384271 102 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 RNA5SP296-201ENST00000410523 111 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 RNU4-6P-201ENST00000410804 122 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC092809.3-201ENST00000415453 231 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 RPL7P37-201ENST00000425095 738 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AL645568.3-201ENST00000433683 316 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 HIGD1AP11-201ENST00000438361 280 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC015911.1-201ENST00000495111 156 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC104164.2-201ENST00000496953 495 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 RNA5SP360-201ENST00000516555 118 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 RNU6-307P-201ENST00000516743 106 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 RNU6-1137P-201ENST00000517073 99 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC009229.3-201ENST00000608056 282 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 MIR8069-1-201ENST00000616627 86 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC087588.2-201ENST00000617667 426 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC012314.7-201ENST00000619693 93 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 MIR8069-2-201ENST00000621412 86 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 AC090337.1-201ENST00000579651 2074 ntBASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC87Q9NVE4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC87Q9NVE4 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.34□□□□□ -1.56
CCDC87Q9NVE4 AC016588.2-201ENST00000632484 3021 ntBASIC5.34□□□□□ -1.56
CCDC87Q9NVE4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC87Q9NVE4 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.34□□□□□ -1.56
CCDC87Q9NVE4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 SNORD62.1-201ENST00000362541 86 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 RNU6-490P-201ENST00000362985 107 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 SNORA73.2-201ENST00000364946 201 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 RPS4XP7-201ENST00000406274 780 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 RAB9AP3-201ENST00000412737 573 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 RPS3AP12-201ENST00000443616 753 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 RPL21P23-201ENST00000446654 460 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 RAB9AP1-201ENST00000449393 573 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 GMPSP1-201ENST00000514075 579 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 MTCO2P24-201ENST00000515611 426 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 SNORA31.22-201ENST00000517204 135 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 RNU4-60P-201ENST00000517239 135 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 AC069113.1-201ENST00000517763 267 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 AC010653.1-201ENST00000571108 881 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 AC007179.3-201ENST00000604976 235 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 AC010680.4-201ENST00000605334 543 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 AL121772.2-201ENST00000614331 297 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 MTND5P30-201ENST00000452896 1731 ntBASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms