Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 GPR143P-201ENST00000434155 205 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC024082.2-201ENST00000434771 238 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC090774.1-201ENST00000435925 246 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AL162389.1-201ENST00000449233 177 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC013267.1-201ENST00000458227 267 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AP002884.2-201ENST00000471647 395 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 Y_RNA.704-201ENST00000516851 102 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC090572.1-201ENST00000519251 160 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AP001893.2-201ENST00000526949 202 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC128657.1-201ENST00000549459 145 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 ARL2BPP2-201ENST00000550907 489 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 HIGD1AP1-201ENST00000550979 275 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC073657.2-201ENST00000605661 303 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC069200.1-201ENST00000609511 323 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AL603758.1-201ENST00000618654 241 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 MIR6130-201ENST00000619419 109 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AL359880.1-201ENST00000621879 266 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AC139792.3-201ENST00000623525 224 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AL079305.1-201ENST00000623159 3008 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RNU6-223P-201ENST00000362830 107 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 SNORA23-201ENST00000365128 182 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RNU6-1181P-201ENST00000384191 106 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 MIR1-2-201ENST00000384961 85 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RNU2-9P-201ENST00000410194 145 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RNA5SP129-201ENST00000410276 118 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RNU2-36P-201ENST00000410361 191 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 MTCO1P39-201ENST00000426148 480 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 MTCO2P19-201ENST00000427513 598 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 ELOCP14-201ENST00000428070 331 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AL596276.1-201ENST00000434465 418 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 ELOCP7-201ENST00000439968 331 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC005094.1-201ENST00000440420 368 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 BNIP3P2-201ENST00000441221 577 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC140076.1-201ENST00000449897 361 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 SNRPGP6-201ENST00000451124 220 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 snoU13.24-201ENST00000458998 104 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC008481.1-201ENST00000463278 396 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 VN1R104P-201ENST00000505115 1009 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 HMGB1P41-201ENST00000520234 440 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC109635.4-202ENST00000531666 412 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RPL21P12-201ENST00000559810 515 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 MIR4293-201ENST00000584305 78 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 GLUD1P4-201ENST00000590914 418 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AP001330.4-201ENST00000604350 154 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RBM11P1-201ENST00000604951 799 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AP001596.2-201ENST00000608410 312 ntBASIC3.3□□□□□ -1.88
PCDH9Q9HC56 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDH9Q9HC56 AC110774.1-201ENST00000623567 2018 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC002546.1-201ENST00000588041 2504 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PCDH9Q9HC56 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PCDH9Q9HC56 SNORA63.1-201ENST00000362493 131 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 Y_RNA.159-201ENST00000363674 87 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 RNA5SP267-201ENST00000364893 126 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 RNU1-39P-201ENST00000383897 165 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC068050.1-201ENST00000394891 380 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC063979.1-201ENST00000415539 377 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AL353193.1-201ENST00000421444 268 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 PPP1R11P2-201ENST00000423543 382 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC093106.2-201ENST00000428212 385 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC005300.1-201ENST00000428401 373 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 MRPS10P2-201ENST00000431226 381 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC091153.1-201ENST00000466297 402 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 RPL7P49-201ENST00000471402 708 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PCDH9Q9HC56 HMGB1P22-201ENST00000505315 124 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 HSPD1P15-201ENST00000505573 1122 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC026427.2-201ENST00000506228 536 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 ARL4AP2-201ENST00000507378 601 ntBASIC3.29□□□□□ -1.88
PCDH9Q9HC56 AC074250.1-201ENST00000511117 192 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms