Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
ZNF541Q9H0D2 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 RNU4-21P-201ENST00000362802 126 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 SNORD116-9-201ENST00000384000 95 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 SNORD116-3-201ENST00000384287 95 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 SNORD116-7-201ENST00000384404 95 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 SNORD116-5-201ENST00000384462 95 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AL591034.1-201ENST00000407447 340 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 RNU2-62P-201ENST00000410868 191 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 ELOCP17-201ENST00000414751 326 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AL365338.1-201ENST00000422282 858 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC244035.1-201ENST00000430042 390 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC119618.1-201ENST00000434191 222 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 SETP8-201ENST00000435341 628 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 HMGN2P20-201ENST00000437531 273 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 HMGB3P12-201ENST00000438745 556 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 SSXP1-201ENST00000453640 473 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 snoU13.23-201ENST00000458863 104 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC117522.3-201ENST00000507974 584 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 Y_RNA.673-201ENST00000516306 88 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 Y_RNA.676-201ENST00000516393 96 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 RNU6-201P-201ENST00000517100 61 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 RPL7P20-201ENST00000520308 745 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 FAM60DP-201ENST00000524174 632 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AP002748.2-201ENST00000528671 348 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AL133153.1-201ENST00000557756 303 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 RNU6-87P-201ENST00000607561 108 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC004908.3-201ENST00000610248 625 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AL158063.1-201ENST00000615349 536 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC108479.2-201ENST00000617314 601 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AC006111.3-201ENST00000622137 383 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 GABRG2-229ENST00000641017 3628 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 AL138713.1-201ENST00000624026 2130 ntBASIC3.31□□□□□ -1.88
ZNF541Q9H0D2 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 U3.6-201ENST00000363622 211 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 SNORD116-1-201ENST00000384335 95 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 SNORA40.3-201ENST00000390964 122 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 RNA5SP274-201ENST00000410484 108 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 Y_RNA.608-201ENST00000410647 95 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 RN7SKP142-201ENST00000411236 328 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 USP9YP13-201ENST00000417797 480 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 TMEM167AP1-201ENST00000423409 219 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AL590383.1-201ENST00000428602 75 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AL603825.1-201ENST00000438481 80 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 RPL17P49-201ENST00000443728 411 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 IFNA11P-201ENST00000446352 526 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 RNA5SP269-201ENST00000459032 137 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 snoU109.1-201ENST00000459339 135 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC109464.2-201ENST00000510242 943 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC096725.1-201ENST00000514266 313 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 FABP5P5-201ENST00000515537 406 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 SNORA70.16-201ENST00000516390 95 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC022616.6-201ENST00000520479 119 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 DEFB108A-201ENST00000530110 222 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC123904.3-201ENST00000547218 814 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AL355836.1-201ENST00000555951 870 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 MIR3146-201ENST00000580367 79 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 PIGPP4-201ENST00000584447 307 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC110760.3-201ENST00000598794 467 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AC092435.3-201ENST00000565538 3654 ntBASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ZNF541Q9H0D2 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC008568.2-201ENST00000623862 2313 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RNA5SP383-201ENST00000362934 120 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RNU5A-8P-201ENST00000364102 114 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 FAT1P1-201ENST00000406588 507 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RPL32P35-201ENST00000415214 394 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms