Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 TAAR7P-201ENST00000436141 242 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL022238.1-201ENST00000442557 355 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC020550.1-201ENST00000447385 163 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 GAPDHP27-201ENST00000447427 1020 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL136380.1-201ENST00000447970 162 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 GAPDHP17-201ENST00000449858 1001 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 SNORD97-201ENST00000459187 142 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL049714.1-201ENST00000466686 347 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 RPS23P3-201ENST00000470993 430 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC010631.1-201ENST00000474150 156 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 MTND1P3-201ENST00000484956 952 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 RPL30P5-201ENST00000494923 336 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 MTCO3P7-201ENST00000510008 774 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC022447.1-201ENST00000515358 464 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 RNA5SP217-201ENST00000515959 91 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 RNU2-10P-201ENST00000516375 211 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 AP001804.3-201ENST00000525146 880 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AP002453.2-201ENST00000533503 320 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 SEPT7P9-203ENST00000604116 343 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC009570.1-201ENST00000609599 745 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC008250.2-201ENST00000615261 205 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 FRG1KP-201ENST00000623592 341 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 EFTUD1P2-201ENST00000514817 1603 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 RNY4P16-201ENST00000364768 94 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 RNU6-348P-201ENST00000384386 107 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 SNORD67-201ENST00000390833 111 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 RN7SKP140-201ENST00000411196 284 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AL451054.2-201ENST00000420896 202 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 USP9YP36-201ENST00000424581 829 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 RPL7P46-201ENST00000425129 740 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 RPL7L1P10-201ENST00000427790 463 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 DPPA2P1-201ENST00000428060 556 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 SNRPEP4-201ENST00000435815 279 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 NDUFB4P6-201ENST00000436819 366 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AP000936.2-201ENST00000447151 681 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 MTND1P27-201ENST00000451117 902 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 RPS20P22-201ENST00000473700 357 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC092185.1-201ENST00000491371 97 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC010587.1-201ENST00000505809 469 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 MTND3P5-201ENST00000512798 333 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 OR5G4P-201ENST00000525251 760 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC128657.1-201ENST00000549459 145 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC124947.2-202ENST00000552735 133 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC006362.1-201ENST00000567392 174 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC005951.1-201ENST00000576706 485 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC010678.1-201ENST00000614118 713 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC068831.7-201ENST00000616954 363 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AC007998.5-201ENST00000622938 237 ntBASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC3Q9BQI4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 HSPE1P11-201ENST00000339579 310 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 MIR22-201ENST00000362190 85 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 RNU6-623P-201ENST00000363143 105 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 Y_RNA.194-201ENST00000363985 102 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 SNORA1.3-201ENST00000384676 136 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 RNU6-1197P-201ENST00000391183 107 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 176.9 ms