Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL049873.1-201ENST00000480540 376 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC009097.3-201ENST00000563557 1018 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC024619.4-201ENST00000580924 316 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC060771.1-201ENST00000582031 164 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AL391813.1-201ENST00000603098 260 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC131235.4-201ENST00000609288 620 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC107075.1-201ENST00000613695 314 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AP000676.3-201ENST00000623299 569 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC120349.3-201ENST00000624377 529 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC079228.1-201ENST00000624774 1049 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 Y_RNA.500-201ENST00000384466 111 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-851P-201ENST00000384565 107 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 SNORA11.2-201ENST00000408318 127 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 RNU2-68P-201ENST00000410878 191 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 MTCO1P17-201ENST00000411522 491 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 RPL21P24-201ENST00000413752 448 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 RPS24P7-201ENST00000416921 246 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AC007560.1-201ENST00000426912 237 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 RPL7P34-201ENST00000433316 712 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 MTND1P28-201ENST00000435623 950 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AC098826.2-201ENST00000452011 651 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 HMGB1P36-201ENST00000487709 576 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AC091951.3-201ENST00000504093 246 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AC119751.5-201ENST00000514077 770 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 MTND5P4-201ENST00000514978 288 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 SNORA31.15-201ENST00000516771 132 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 SCARNA3-201ENST00000517097 143 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 EIF4BP1-201ENST00000554881 351 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 MTND4P33-201ENST00000556706 766 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 UBL5P2-201ENST00000583788 219 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AL589743.7-201ENST00000612637 233 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 AC005332.10-201ENST00000612725 619 ntBASIC2.63□□□□□ -1.99
ZNF540Q8NDQ6 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 MIR22-201ENST00000362190 85 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 SNORD113-6-201ENST00000363345 75 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-83P-201ENST00000384568 112 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-636P-201ENST00000384598 107 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 MIR592-201ENST00000384959 97 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-220P-201ENST00000390919 107 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 BTF3L4P3-201ENST00000418879 476 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 MTCO2P21-201ENST00000419780 677 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC244035.1-201ENST00000430042 390 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 ATP5F1P1-201ENST00000433775 569 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 MTCO2P20-201ENST00000437339 673 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC133134.1-201ENST00000466800 359 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 TRBV1-201ENST00000476502 284 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC083906.5-201ENST00000503722 328 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 LTV1P1-201ENST00000510683 1237 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC008885.1-201ENST00000514930 301 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC100870.1-201ENST00000522035 505 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 MTATP6P15-201ENST00000527233 835 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 OR4R1P-201ENST00000529879 463 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 MIR3199-1-201ENST00000582434 88 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AP001269.3-201ENST00000588718 329 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AP000787.2-201ENST00000604432 568 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC025588.2-201ENST00000604851 466 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC103710.1-201ENST00000610003 901 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC010678.1-201ENST00000614118 713 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC021755.4-201ENST00000616620 456 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC013470.4-201ENST00000619978 986 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC022079.1-201ENST00000621546 602 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC079416.3-201ENST00000624479 549 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC006386.2-201ENST00000624491 75 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC012005.1-201ENST00000624575 75 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 AC116618.1-201ENST00000634617 774 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
ZNF540Q8NDQ6 ZNF271P-202ENST00000465539 1970 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 ZNF876P-202ENST00000398732 1485 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms