Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNA5SP454-201ENST00000517231 127 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 IGKV2-23-201ENST00000518729 323 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AL133271.1-201ENST00000538229 291 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC069240.1-201ENST00000548774 375 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC090877.1-201ENST00000561418 344 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 MTND6P33-201ENST00000571794 183 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC025588.3-201ENST00000604182 274 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC025034.2-201ENST00000623264 286 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AL136313.1-201ENST00000624804 202 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 BDP1P-201ENST00000582658 1990 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC090971.4-201ENST00000560291 1800 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-1252P-201ENST00000363054 104 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-1309P-201ENST00000363305 108 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.212-201ENST00000364177 102 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RNVU1-3-201ENST00000364313 161 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RNU5E-6P-201ENST00000365574 115 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC117470.1-201ENST00000381974 330 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-574P-201ENST00000384265 107 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-308P-201ENST00000390957 107 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 BX323014.1-201ENST00000412876 237 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC114491.1-201ENST00000416095 246 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC097713.2-201ENST00000430199 356 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 MRPS31P2-201ENST00000451581 518 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 ELOCP24-201ENST00000456370 334 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.653-201ENST00000459091 95 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RPS27P27-201ENST00000498779 255 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 TRBVA-201ENST00000498804 316 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 CCDC34P1-201ENST00000507441 517 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 MTCYBP40-201ENST00000509390 1135 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 IGLVIV-53-201ENST00000520107 367 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 IMMP1LP2-201ENST00000552954 492 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AP000654.2-201ENST00000605633 586 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC022893.3-201ENST00000607665 437 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AC055839.1-201ENST00000634467 498 ntBASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.91□□□□□ -1.62
USHBP1Q8N6Y0 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
USHBP1Q8N6Y0 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
USHBP1Q8N6Y0 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
USHBP1Q8N6Y0 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-1287P-201ENST00000362914 107 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 Y_RNA.112-201ENST00000363250 102 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-1188P-201ENST00000363795 107 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-1078P-201ENST00000364522 103 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 Y_RNA.401-201ENST00000383965 117 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 Y_RNA.482-201ENST00000384377 111 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-1060P-201ENST00000384664 107 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-1106P-201ENST00000390845 107 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNU2-36P-201ENST00000410361 191 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 Y_RNA.605-201ENST00000410577 105 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AF228730.2-201ENST00000438784 848 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC020550.1-201ENST00000447385 163 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 SNORD97-201ENST00000459187 142 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC004801.2-202ENST00000463559 283 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-256P-201ENST00000516747 97 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 HMGB1P19-201ENST00000517578 577 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC024619.4-201ENST00000580924 316 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 MIR3668-201ENST00000582138 75 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 MIR3672-201ENST00000584290 82 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RMST_9.1-201ENST00000619945 193 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 AC090337.1-201ENST00000579651 2074 ntBASIC4.9□□□□□ -1.63
USHBP1Q8N6Y0 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms