Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC087359.1-201ENST00000508335 1740 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
USF3Q68DE3 UBE2V1P6-201ENST00000430840 422 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC0.89□□□□□ -2.27
USF3Q68DE3 HSPE1P24-201ENST00000450782 238 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC0.89□□□□□ -2.27
USF3Q68DE3 NDUFS5P6-201ENST00000529136 295 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.89□□□□□ -2.27
USF3Q68DE3 VN1R107P-201ENST00000601784 209 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AL355297.2-201ENST00000604792 129 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC106028.5-201ENST00000610332 395 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC005332.10-201ENST00000612725 619 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
USF3Q68DE3 TATDN1P1-201ENST00000414123 891 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC098614.2-201ENST00000426040 255 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 SNORD97-201ENST00000459187 142 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 RPL30P12-201ENST00000474666 353 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC021382.1-201ENST00000483523 359 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 RNA5SP436-201ENST00000516020 115 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC087854.1-201ENST00000519706 414 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AC118942.1-201ENST00000529674 1035 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC0.89□□□□□ -2.27
USF3Q68DE3 RN7SL793P-201ENST00000583259 296 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 SDR42E1P2-201ENST00000614861 481 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 AL445493.3-201ENST00000619568 477 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 SDR42E1P4-201ENST00000620894 481 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 DDX43P2-201ENST00000604753 1354 ntBASIC0.89□□□□□ -2.27
USF3Q68DE3 IL33-202ENST00000417746 2327 ntTSL 2 BASIC0.88□□□□□ -2.27
USF3Q68DE3 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
USF3Q68DE3 RNU1-148P-201ENST00000384472 162 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 OR51A5P-201ENST00000415429 942 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 PMCHL2-203ENST00000457791 237 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 MED28P6-201ENST00000558776 231 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 AC079148.1-201ENST00000565944 819 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 SUB1P4-201ENST00000566062 339 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC0.88□□□□□ -2.27
USF3Q68DE3 U6.48-201ENST00000618523 106 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 SNORA62.1-201ENST00000364287 154 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 AL133384.1-201ENST00000412744 351 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 AIMP1P2-201ENST00000425294 312 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.88□□□□□ -2.27
USF3Q68DE3 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC0.88□□□□□ -2.27
USF3Q68DE3 AC110792.2-201ENST00000510278 224 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 MIR3117-201ENST00000584034 78 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC0.88□□□□□ -2.27
USF3Q68DE3 AC243773.3-201ENST00000613270 256 ntBASIC0.88□□□□□ -2.27
USF3Q68DE3 AC111188.2-201ENST00000529697 1387 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC0.87□□□□□ -2.27
USF3Q68DE3 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.87□□□□□ -2.27
USF3Q68DE3 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC0.87□□□□□ -2.27
USF3Q68DE3 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC0.87□□□□□ -2.27
USF3Q68DE3 RNA5SP310-201ENST00000459084 116 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 OR9N1P-202ENST00000494289 481 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 KLRA1P-201ENST00000503499 986 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AC008127.2-201ENST00000549925 1075 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 HSPE1P4-201ENST00000550617 308 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AC105036.1-201ENST00000566222 271 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AC021755.4-201ENST00000616620 456 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AC025048.6-202ENST00000627667 438 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AC009812.4-201ENST00000569134 1805 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AL390862.1-201ENST00000635467 1469 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 RNU6-37P-201ENST00000362692 107 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 RNU6-11P-201ENST00000364234 107 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
USF3Q68DE3 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.87□□□□□ -2.27
USF3Q68DE3 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC0.87□□□□□ -2.27
USF3Q68DE3 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.87□□□□□ -2.27
USF3Q68DE3 MTCO3P4-201ENST00000419236 787 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 UBE2D3P2-201ENST00000424409 445 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 MTCYBP34-201ENST00000439552 670 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.87□□□□□ -2.27
USF3Q68DE3 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.87□□□□□ -2.27
USF3Q68DE3 EIF4EP3-201ENST00000498782 656 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC0.87□□□□□ -2.27
USF3Q68DE3 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC0.87□□□□□ -2.27
USF3Q68DE3 MRPS17P9-201ENST00000511924 393 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC0.87□□□□□ -2.27
USF3Q68DE3 RNA5SP384-201ENST00000516615 116 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 RNU6-1308P-201ENST00000516817 103 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.87□□□□□ -2.27
USF3Q68DE3 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC0.87□□□□□ -2.27
USF3Q68DE3 SNORD114-21-201ENST00000606412 72 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC0.87□□□□□ -2.27
USF3Q68DE3 AL161629.2-201ENST00000615347 275 ntBASIC0.87□□□□□ -2.27
USF3Q68DE3 RNU11-5P-201ENST00000391216 129 ntBASIC0.86□□□□□ -2.27
USF3Q68DE3 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC0.86□□□□□ -2.27
USF3Q68DE3 NAP1L1P3-201ENST00000462291 880 ntBASIC0.86□□□□□ -2.27
USF3Q68DE3 AC096751.1-202ENST00000502691 1067 ntBASIC0.86□□□□□ -2.27
USF3Q68DE3 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.86□□□□□ -2.27
USF3Q68DE3 MRPS36P2-201ENST00000512569 299 ntBASIC0.86□□□□□ -2.27
USF3Q68DE3 RNU2-19P-201ENST00000517288 84 ntBASIC0.86□□□□□ -2.27
USF3Q68DE3 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC0.86□□□□□ -2.27
USF3Q68DE3 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.86□□□□□ -2.27
USF3Q68DE3 AC092474.3-201ENST00000603022 568 ntBASIC0.86□□□□□ -2.27
USF3Q68DE3 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC0.86□□□□□ -2.27
USF3Q68DE3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.86□□□□□ -2.27
USF3Q68DE3 AL136372.1-201ENST00000403060 228 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 EBAG9P1-201ENST00000418955 543 ntBASIC0.85□□□□□ -2.27
USF3Q68DE3 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.85□□□□□ -2.27
USF3Q68DE3 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms