Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC135507.2-201ENST00000612443 309 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC006386.2-201ENST00000624491 75 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC012005.1-201ENST00000624575 75 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC080100.1-201ENST00000624239 5356 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC135776.4-201ENST00000624300 1904 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 CCT4P2-201ENST00000233836 1548 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 RNA5SP393-201ENST00000363423 117 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 RNU6-884P-201ENST00000363889 107 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 RSL24D1P4-201ENST00000400938 484 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC098614.2-201ENST00000426040 255 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC010153.1-201ENST00000432862 727 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 LARP1BP3-201ENST00000437229 869 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC025750.2-201ENST00000442609 450 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 RPS29P20-201ENST00000489592 171 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC034244.1-201ENST00000507687 207 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 LTV1P1-201ENST00000510683 1237 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 MTND5P13-201ENST00000513046 1079 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 RNU6-927P-201ENST00000516199 100 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 RNA5SP282-201ENST00000516355 108 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC087276.1-201ENST00000529659 480 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC007115.1-201ENST00000546853 234 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AGGF1P5-201ENST00000567900 919 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 NRBF2P5-201ENST00000603087 788 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC239868.4-201ENST00000608318 671 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 AC034102.8-201ENST00000615146 484 ntBASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC40Q4G0X9 OR5J1P-201ENST00000313544 939 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 RNU6-461P-201ENST00000364195 107 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 SNORA68.1-201ENST00000364537 132 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AL122016.1-201ENST00000403365 367 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AL513475.1-201ENST00000406602 315 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 RNU2-52P-201ENST00000410680 190 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC080125.1-201ENST00000414888 684 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 BTF3L4P3-201ENST00000418879 476 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AL022400.1-201ENST00000423946 935 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC244035.1-201ENST00000430042 390 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 ARL5AP4-201ENST00000430731 512 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC005094.1-201ENST00000440420 368 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 RPL7P36-201ENST00000444633 681 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 RPS3AP14-201ENST00000483907 780 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 RPL36AP51-201ENST00000487216 318 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 RNA5SP402-201ENST00000517148 110 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 COX6CP5-201ENST00000527162 228 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC243972.3-201ENST00000539655 198 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 GTF3AP2-201ENST00000557014 266 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 MIR4446-201ENST00000578505 67 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC068790.3-201ENST00000602988 553 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AC008498.1-201ENST00000613012 531 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 AP002782.1-201ENST00000623107 614 ntBASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CCDC40Q4G0X9 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 MTND4P16-201ENST00000466108 1367 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 SNORD113-6-201ENST00000363345 75 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 MIR888-201ENST00000401186 77 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AL359634.1-202ENST00000404721 284 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 HMGB1P11-201ENST00000413899 637 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 COTL1P1-201ENST00000422309 375 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 UBE2FP3-201ENST00000436366 524 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms