Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-441P-201ENST00000384545 106 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 MIR524-201ENST00000385242 87 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 TMSB4XP8-201ENST00000402089 135 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 U3.40-201ENST00000408706 208 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 TMSB4XP6-201ENST00000415187 135 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 POLR2J4-204ENST00000418424 324 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RPL27AP8-201ENST00000424277 446 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 TMSB4XP1-201ENST00000424567 135 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AL513185.2-201ENST00000425543 193 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RPL36P19-201ENST00000430744 301 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC005345.1-201ENST00000431868 217 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC004865.1-201ENST00000442276 1003 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RNA5SP310-201ENST00000459084 116 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 snoU13.28-201ENST00000459235 104 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RPS29P1-201ENST00000465274 159 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RN7SL274P-201ENST00000492268 272 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC093767.1-201ENST00000504523 156 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC109446.2-201ENST00000567872 497 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 BNIP3P24-201ENST00000593398 557 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AP002906.1-201ENST00000603405 233 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AL136363.1-201ENST00000605349 337 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC013468.1-201ENST00000608680 598 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC027309.3-201ENST00000623419 351 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RNU6-1032P-201ENST00000384100 107 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 MIR649-201ENST00000384843 97 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 MIR493-201ENST00000385254 89 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 SNORD23.1-201ENST00000408212 104 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RNU4-78P-201ENST00000410940 126 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 UBE2D3P2-201ENST00000424409 445 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 RPL35AP22-201ENST00000436855 335 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC092170.1-201ENST00000440211 356 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 OR9N1P-202ENST00000494289 481 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 Y_RNA.675-201ENST00000516389 149 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AP002826.1-201ENST00000608835 315 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 AP001033.2-201ENST00000609701 1003 ntBASIC1.8□□□□□ -2.12
CCDC88AQ3V6T2 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 SSXP10-201ENST00000402595 565 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AL035410.1-201ENST00000427409 427 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AL589880.1-201ENST00000448271 287 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 RPL32P14-201ENST00000463196 378 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 RN7SKP49-201ENST00000516675 260 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC087808.1-201ENST00000520501 361 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC022634.1-201ENST00000520765 532 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 AL078603.1-201ENST00000603824 313 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 MKKS-204ENST00000639674 192 ntBASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC88AQ3V6T2 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 RNU6-1074P-201ENST00000383995 104 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 RNU6-1072P-201ENST00000384703 107 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 RNU6-443P-201ENST00000384780 107 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 U3.29-201ENST00000391296 212 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 MIR1304-201ENST00000408243 91 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 RNU2-47P-201ENST00000410649 186 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 TPTE2P1-204ENST00000435256 593 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AC015908.1-201ENST00000478739 476 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 MTCO2P9-201ENST00000503214 694 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 HMGB3P3-201ENST00000510526 400 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AC022483.1-201ENST00000514020 567 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AC090897.2-201ENST00000581715 130 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 MIR5194-201ENST00000582634 120 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AC106791.2-201ENST00000604680 391 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AC106900.2-201ENST00000604994 317 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 OR10AB1P-201ENST00000609613 938 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 AC068944.2-201ENST00000610373 403 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 OR5H6-203ENST00000642105 978 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 CENPCP1-201ENST00000533085 2578 ntBASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC88AQ3V6T2 DBF4P1-201ENST00000412976 1892 ntBASIC1.78□□□□□ -2.13
CCDC88AQ3V6T2 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 PGBD4P3-201ENST00000440731 581 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AL353691.1-201ENST00000451332 387 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC087588.1-201ENST00000462203 316 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 137.9 ms