Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 ATP5EP1-201ENST00000510257 156 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 AC093770.1-201ENST00000511559 571 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 AC109471.1-201ENST00000511631 612 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.4□□□□□ -2.19
CHD3Q12873 AC114797.1-201ENST00000514003 728 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 RNU6-1095P-201ENST00000516148 108 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.4□□□□□ -2.19
CHD3Q12873 AC007375.1-201ENST00000554513 578 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 SNORD53B-201ENST00000577887 78 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.4□□□□□ -2.19
CHD3Q12873 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.4□□□□□ -2.19
CHD3Q12873 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 AL022578.1-201ENST00000439330 1433 ntBASIC1.4□□□□□ -2.19
CHD3Q12873 ZNF876P-202ENST00000398732 1485 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CHD3Q12873 RNA5SP363-201ENST00000365072 115 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 RNU6-53P-201ENST00000365367 106 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 OR1L1-202ENST00000373686 1083 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 RNU6-1074P-201ENST00000383995 104 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 U3.29-201ENST00000391296 212 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 UBE2V1P11-201ENST00000411559 285 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC1.39□□□□□ -2.19
CHD3Q12873 AC099548.1-201ENST00000421443 426 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 UBE2D3P2-201ENST00000424409 445 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 FO393414.1-201ENST00000428697 1184 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 MOB1AP2-201ENST00000446060 614 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.39□□□□□ -2.19
CHD3Q12873 AL121594.1-201ENST00000475906 575 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC093767.1-201ENST00000504523 156 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.39□□□□□ -2.19
CHD3Q12873 RNA5SP102-201ENST00000516865 106 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.39□□□□□ -2.19
CHD3Q12873 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.39□□□□□ -2.19
CHD3Q12873 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.39□□□□□ -2.19
CHD3Q12873 AC022880.1-201ENST00000534017 973 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AL161670.1-201ENST00000554348 137 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AL391261.3-201ENST00000557194 520 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC095057.3-201ENST00000567102 1157 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AL161423.1-201ENST00000613700 262 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 UCA1.1-201ENST00000620952 75 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CHD3Q12873 NUP58P1-201ENST00000502546 1738 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 RNU6-989P-201ENST00000362756 107 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 RNA5SP125-201ENST00000364843 120 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CHD3Q12873 SUMO2P12-201ENST00000405924 140 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AL358453.1-201ENST00000422522 250 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC079780.1-201ENST00000428259 207 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC1.39□□□□□ -2.19
CHD3Q12873 HMGN1P7-201ENST00000491722 313 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC1.39□□□□□ -2.19
CHD3Q12873 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.39□□□□□ -2.19
CHD3Q12873 SNORA31.25-201ENST00000517242 134 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC008676.3-201ENST00000521237 435 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.39□□□□□ -2.19
CHD3Q12873 OR8K4P-201ENST00000534608 872 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 SETP7-201ENST00000552169 453 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 PSMA3P-201ENST00000555485 635 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AL669831.4-202ENST00000590817 238 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC022387.2-201ENST00000604050 448 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 DPRXP5-201ENST00000604662 539 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 AC106052.1-201ENST00000608029 497 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 RMST_6.1-201ENST00000611980 203 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 DUXAP9-208ENST00000622815 614 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.39□□□□□ -2.19
CHD3Q12873 U6.107-201ENST00000637108 79 ntBASIC1.39□□□□□ -2.19
CHD3Q12873 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.38□□□□□ -2.19
CHD3Q12873 AC011477.1-204ENST00000623416 1325 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 DDX10P1-201ENST00000448545 1933 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 RNU6-251P-201ENST00000363235 104 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 RNA5SP56-201ENST00000410277 118 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 RNU4-78P-201ENST00000410940 126 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 AL136133.1-201ENST00000413694 376 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 AL365496.1-201ENST00000426885 215 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.38□□□□□ -2.19
CHD3Q12873 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.38□□□□□ -2.19
CHD3Q12873 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC1.38□□□□□ -2.19
CHD3Q12873 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC1.38□□□□□ -2.19
CHD3Q12873 AC009268.1-201ENST00000561352 1203 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 MIR4421-201ENST00000578133 69 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.38□□□□□ -2.19
CHD3Q12873 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC1.38□□□□□ -2.19
CHD3Q12873 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.38□□□□□ -2.19
CHD3Q12873 BX322635.1-201ENST00000605804 496 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 AC109454.4-201ENST00000623411 649 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 AC098679.5-201ENST00000624394 571 ntBASIC1.38□□□□□ -2.19
CHD3Q12873 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.38□□□□□ -2.19
CHD3Q12873 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CHD3Q12873 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
CHD3Q12873 RNU6-1339P-201ENST00000363574 91 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 RNA5SP325-201ENST00000363756 130 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 SNORA68.1-201ENST00000364537 132 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.37□□□□□ -2.19
CHD3Q12873 AL513475.1-201ENST00000406602 315 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 RN7SKP51-201ENST00000410781 304 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD3Q12873 AC074117.2-201ENST00000417130 397 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.37□□□□□ -2.19
CHD3Q12873 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.37□□□□□ -2.19
CHD3Q12873 OR10R1P-201ENST00000441524 1141 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms