Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNU6-2-201ENST00000384627 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-29P-201ENST00000384637 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-9-201ENST00000384776 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-33P-201ENST00000384793 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 MIR124-3-201ENST00000384866 87 ntBASIC4.4□□□□□ -1.71
RNF4P78317 AL513475.1-201ENST00000406602 315 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RPL37P18-201ENST00000411602 243 ntBASIC4.4□□□□□ -1.71
RNF4P78317 AL158156.1-201ENST00000422509 473 ntBASIC4.4□□□□□ -1.71
RNF4P78317 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.4□□□□□ -1.71
RNF4P78317 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC4.4□□□□□ -1.71
RNF4P78317 DYNLT3P2-201ENST00000442517 295 ntBASIC4.4□□□□□ -1.71
RNF4P78317 H2AFZP5-201ENST00000446960 382 ntBASIC4.4□□□□□ -1.71
RNF4P78317 OR2AQ1P-201ENST00000451972 200 ntBASIC4.4□□□□□ -1.71
RNF4P78317 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.4□□□□□ -1.71
RNF4P78317 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 RNU7-169P-201ENST00000459456 61 ntBASIC4.4□□□□□ -1.71
RNF4P78317 FTH1P2-201ENST00000466086 412 ntBASIC4.4□□□□□ -1.71
RNF4P78317 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 AC069499.1-201ENST00000489433 509 ntBASIC4.4□□□□□ -1.71
RNF4P78317 HMGN1P11-201ENST00000508668 303 ntBASIC4.4□□□□□ -1.71
RNF4P78317 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-1256P-201ENST00000516539 103 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-388P-201ENST00000517012 105 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-389P-201ENST00000517048 105 ntBASIC4.4□□□□□ -1.71
RNF4P78317 AC007991.1-201ENST00000522680 631 ntBASIC4.4□□□□□ -1.71
RNF4P78317 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.4□□□□□ -1.71
RNF4P78317 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.4□□□□□ -1.71
RNF4P78317 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 RNA5SP108-201ENST00000605921 117 ntBASIC4.4□□□□□ -1.71
RNF4P78317 RNU6-6P-201ENST00000606623 107 ntBASIC4.4□□□□□ -1.71
RNF4P78317 AL021879.1-201ENST00000611756 288 ntBASIC4.4□□□□□ -1.71
RNF4P78317 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.4□□□□□ -1.71
RNF4P78317 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
RNF4P78317 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.4□□□□□ -1.71
RNF4P78317 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.39□□□□□ -1.71
RNF4P78317 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
RNF4P78317 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
RNF4P78317 AC107068.1-201ENST00000563286 4218 ntBASIC4.39□□□□□ -1.71
RNF4P78317 ZFRP1-201ENST00000457579 2970 ntBASIC4.39□□□□□ -1.71
RNF4P78317 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.39□□□□□ -1.71
RNF4P78317 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.39□□□□□ -1.71
RNF4P78317 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
RNF4P78317 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.39□□□□□ -1.71
RNF4P78317 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
RNF4P78317 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
RNF4P78317 AL590240.1-201ENST00000334118 313 ntBASIC4.39□□□□□ -1.71
RNF4P78317 RNA5SP502-201ENST00000362694 119 ntBASIC4.39□□□□□ -1.71
RNF4P78317 Y_RNA.152-201ENST00000363578 100 ntBASIC4.39□□□□□ -1.71
RNF4P78317 RNU6-1317P-201ENST00000364582 104 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AL138885.1-201ENST00000405921 675 ntBASIC4.39□□□□□ -1.71
RNF4P78317 EI24P1-201ENST00000416584 867 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.39□□□□□ -1.71
RNF4P78317 EIF4HP2-201ENST00000424380 563 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.39□□□□□ -1.71
RNF4P78317 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.39□□□□□ -1.71
RNF4P78317 Z98949.2-201ENST00000440996 144 ntBASIC4.39□□□□□ -1.71
RNF4P78317 NDUFS5P3-201ENST00000450668 321 ntBASIC4.39□□□□□ -1.71
RNF4P78317 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC4.39□□□□□ -1.71
RNF4P78317 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
RNF4P78317 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.39□□□□□ -1.71
RNF4P78317 Y_RNA.687-201ENST00000516558 91 ntBASIC4.39□□□□□ -1.71
RNF4P78317 Y_RNA.715-201ENST00000517082 110 ntBASIC4.39□□□□□ -1.71
RNF4P78317 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.39□□□□□ -1.71
RNF4P78317 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
RNF4P78317 AC084851.1-201ENST00000529105 249 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AC040926.1-201ENST00000530195 238 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AL110118.1-201ENST00000553543 400 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.39□□□□□ -1.71
RNF4P78317 AC006600.1-201ENST00000572529 153 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.39□□□□□ -1.71
RNF4P78317 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.39□□□□□ -1.71
RNF4P78317 Z98751.3-201ENST00000604447 521 ntBASIC4.39□□□□□ -1.71
RNF4P78317 AC062037.2-201ENST00000610137 73 ntBASIC4.39□□□□□ -1.71
RNF4P78317 MIR1244-1-201ENST00000612829 85 ntBASIC4.39□□□□□ -1.71
RNF4P78317 FP236240.3-201ENST00000623061 327 ntBASIC4.39□□□□□ -1.71
RNF4P78317 MIR1244-3-201ENST00000635744 85 ntBASIC4.39□□□□□ -1.71
RNF4P78317 MIR1244-2-201ENST00000636449 85 ntBASIC4.39□□□□□ -1.71
RNF4P78317 MIR1244-4-202ENST00000636813 85 ntBASIC4.39□□□□□ -1.71
RNF4P78317 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
RNF4P78317 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
RNF4P78317 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.39□□□□□ -1.71
RNF4P78317 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
RNF4P78317 AL356489.2-201ENST00000566968 3528 ntBASIC4.39□□□□□ -1.71
RNF4P78317 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
RNF4P78317 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.39□□□□□ -1.71
RNF4P78317 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
RNF4P78317 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
RNF4P78317 AC004925.1-201ENST00000624256 2706 ntBASIC4.38□□□□□ -1.71
RNF4P78317 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.38□□□□□ -1.71
RNF4P78317 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms