Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 COX6CP5-201ENST00000527162 228 ntBASIC2.65□□□□□ -1.98
MSH6P52701 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.65□□□□□ -1.98
MSH6P52701 MIR5089-201ENST00000580047 84 ntBASIC2.65□□□□□ -1.98
MSH6P52701 AC012443.1-201ENST00000605605 231 ntBASIC2.65□□□□□ -1.98
MSH6P52701 AC099654.8-201ENST00000637757 681 ntBASIC2.65□□□□□ -1.98
MSH6P52701 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
MSH6P52701 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.65□□□□□ -1.99
MSH6P52701 AC005336.3-201ENST00000623833 2679 ntBASIC2.65□□□□□ -1.99
MSH6P52701 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
MSH6P52701 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH6P52701 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
MSH6P52701 SET-203ENST00000372688 801 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH6P52701 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
MSH6P52701 RNU1-109P-201ENST00000383960 147 ntBASIC2.64□□□□□ -1.99
MSH6P52701 RNU6-882P-201ENST00000391025 103 ntBASIC2.64□□□□□ -1.99
MSH6P52701 DHFRP6-201ENST00000401776 268 ntBASIC2.64□□□□□ -1.99
MSH6P52701 HMGB1P17-201ENST00000403495 628 ntBASIC2.64□□□□□ -1.99
MSH6P52701 MIR1276-201ENST00000408707 83 ntBASIC2.64□□□□□ -1.99
MSH6P52701 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH6P52701 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH6P52701 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH6P52701 NANOGP2-201ENST00000435391 727 ntBASIC2.64□□□□□ -1.99
MSH6P52701 RNF2P1-201ENST00000442955 1010 ntBASIC2.64□□□□□ -1.99
MSH6P52701 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
MSH6P52701 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH6P52701 AC023424.2-201ENST00000493479 777 ntBASIC2.64□□□□□ -1.99
MSH6P52701 GTF2IP9-201ENST00000502460 301 ntBASIC2.64□□□□□ -1.99
MSH6P52701 MTCYBP17-201ENST00000503579 789 ntBASIC2.64□□□□□ -1.99
MSH6P52701 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH6P52701 AC113420.1-201ENST00000507903 571 ntBASIC2.64□□□□□ -1.99
MSH6P52701 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH6P52701 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.64□□□□□ -1.99
MSH6P52701 MIR4255-201ENST00000579351 72 ntBASIC2.64□□□□□ -1.99
MSH6P52701 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.64□□□□□ -1.99
MSH6P52701 BNIP3P26-201ENST00000600827 554 ntBASIC2.64□□□□□ -1.99
MSH6P52701 SNRPGP19-201ENST00000603826 189 ntBASIC2.64□□□□□ -1.99
MSH6P52701 AL031176.1-201ENST00000604554 466 ntBASIC2.64□□□□□ -1.99
MSH6P52701 AL158050.2-201ENST00000605336 568 ntBASIC2.64□□□□□ -1.99
MSH6P52701 PART1_2.1-201ENST00000612397 250 ntBASIC2.64□□□□□ -1.99
MSH6P52701 AL589994.2-201ENST00000621124 579 ntBASIC2.64□□□□□ -1.99
MSH6P52701 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
MSH6P52701 AC090740.1-201ENST00000623193 2262 ntBASIC2.63□□□□□ -1.99
MSH6P52701 SNORD116-12-201ENST00000384468 92 ntBASIC2.63□□□□□ -1.99
MSH6P52701 RNU2-68P-201ENST00000410878 191 ntBASIC2.63□□□□□ -1.99
MSH6P52701 MTATP6P27-201ENST00000416987 621 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AL358453.1-201ENST00000422522 250 ntBASIC2.63□□□□□ -1.99
MSH6P52701 MTCO3P30-201ENST00000426425 670 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
MSH6P52701 RNU7-95P-201ENST00000459222 64 ntBASIC2.63□□□□□ -1.99
MSH6P52701 RPS29P12-201ENST00000460178 152 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AC007182.2-201ENST00000489251 402 ntBASIC2.63□□□□□ -1.99
MSH6P52701 RPL21P131-201ENST00000497298 483 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AC114322.1-201ENST00000506771 926 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AC008837.2-201ENST00000513076 418 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AC022861.1-201ENST00000522981 663 ntBASIC2.63□□□□□ -1.99
MSH6P52701 ERHP1-201ENST00000523006 310 ntBASIC2.63□□□□□ -1.99
MSH6P52701 SNORA4-201ENST00000584302 138 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AC015688.2-201ENST00000584523 262 ntBASIC2.63□□□□□ -1.99
MSH6P52701 BNIP3P27-201ENST00000599991 412 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AC091057.2-201ENST00000602594 792 ntBASIC2.63□□□□□ -1.99
MSH6P52701 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
MSH6P52701 MIRLET7G-201ENST00000362280 84 ntBASIC2.62□□□□□ -1.99
MSH6P52701 RNU6-560P-201ENST00000364007 108 ntBASIC2.62□□□□□ -1.99
MSH6P52701 CD24P4-201ENST00000382840 243 ntBASIC2.62□□□□□ -1.99
MSH6P52701 USP9YP27-201ENST00000418455 438 ntBASIC2.62□□□□□ -1.99
MSH6P52701 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH6P52701 MTCO2P5-201ENST00000422621 426 ntBASIC2.62□□□□□ -1.99
MSH6P52701 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH6P52701 RAC1P7-201ENST00000445367 377 ntBASIC2.62□□□□□ -1.99
MSH6P52701 SNORA70.16-201ENST00000516390 95 ntBASIC2.62□□□□□ -1.99
MSH6P52701 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH6P52701 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.62□□□□□ -1.99
MSH6P52701 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.62□□□□□ -1.99
MSH6P52701 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
MSH6P52701 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH6P52701 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH6P52701 OR4K8P-201ENST00000578842 1048 ntBASIC2.62□□□□□ -1.99
MSH6P52701 AC068790.3-201ENST00000602988 553 ntBASIC2.62□□□□□ -1.99
MSH6P52701 DUXAP11-201ENST00000603858 526 ntBASIC2.62□□□□□ -1.99
MSH6P52701 AC009220.3-201ENST00000604318 586 ntBASIC2.62□□□□□ -1.99
MSH6P52701 AC004853.1-201ENST00000604902 698 ntBASIC2.62□□□□□ -1.99
MSH6P52701 MIR8081-201ENST00000611533 95 ntBASIC2.62□□□□□ -1.99
MSH6P52701 AC034102.8-201ENST00000615146 484 ntBASIC2.62□□□□□ -1.99
MSH6P52701 AL596245.1-201ENST00000618994 362 ntBASIC2.62□□□□□ -1.99
MSH6P52701 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
MSH6P52701 AC009812.4-201ENST00000569134 1805 ntBASIC2.62□□□□□ -1.99
MSH6P52701 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
MSH6P52701 RNU6-1027P-201ENST00000383998 107 ntBASIC2.61□□□□□ -1.99
MSH6P52701 RNU6-1122P-201ENST00000384449 107 ntBASIC2.61□□□□□ -1.99
MSH6P52701 MIR122-201ENST00000385044 85 ntBASIC2.61□□□□□ -1.99
MSH6P52701 TPMTP2-201ENST00000414372 726 ntBASIC2.61□□□□□ -1.99
MSH6P52701 WARS2P1-201ENST00000429678 537 ntBASIC2.61□□□□□ -1.99
MSH6P52701 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.61□□□□□ -1.99
MSH6P52701 MTCYBP45-201ENST00000435243 565 ntBASIC2.61□□□□□ -1.99
MSH6P52701 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
MSH6P52701 MTND4P6-201ENST00000438297 472 ntBASIC2.61□□□□□ -1.99
MSH6P52701 Z96811.1-201ENST00000445880 108 ntBASIC2.61□□□□□ -1.99
MSH6P52701 MTCO2P25-201ENST00000447065 681 ntBASIC2.61□□□□□ -1.99
MSH6P52701 RPL23AP7-203ENST00000449021 469 ntBASIC2.61□□□□□ -1.99
MSH6P52701 snoU109.3-201ENST00000459477 145 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 141.9 ms