Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC060771.1-201ENST00000582031 164 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC005498.1-201ENST00000592125 465 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 DEFB131E-202ENST00000602581 683 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 SRGNP1-201ENST00000603392 451 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC073648.5-201ENST00000603502 305 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 SEPT7P9-203ENST00000604116 343 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AL021997.1-201ENST00000605757 193 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.11□□□□□ -1.91
HNF4AP41235 U1.23-201ENST00000610293 146 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 RNU1-68P-201ENST00000615382 146 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC138932.5-201ENST00000617759 563 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 U1.39-201ENST00000621562 146 ntBASIC3.11□□□□□ -1.91
HNF4AP41235 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.11□□□□□ -1.91
HNF4AP41235 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HNF4AP41235 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HNF4AP41235 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.11□□□□□ -1.91
HNF4AP41235 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
HNF4AP41235 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HNF4AP41235 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.1□□□□□ -1.91
HNF4AP41235 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HNF4AP41235 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HNF4AP41235 MTND5P29-201ENST00000458676 1807 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 CCT4P2-201ENST00000233836 1548 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HNF4AP41235 SNORD56.5-201ENST00000364281 72 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HNF4AP41235 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HNF4AP41235 AL451062.2-201ENST00000427515 271 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 GAPDHP27-201ENST00000447427 1020 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 TPT1P14-201ENST00000448018 505 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 USP9YP12-201ENST00000450481 570 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 AL590365.1-201ENST00000450788 243 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 SNORD42A-201ENST00000459584 64 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HNF4AP41235 SEM1P1-201ENST00000506694 209 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.1□□□□□ -1.91
HNF4AP41235 RNU6-720P-201ENST00000516363 108 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 RNU6-405P-201ENST00000516637 110 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.1□□□□□ -1.91
HNF4AP41235 UBE2L4-201ENST00000587688 464 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.1□□□□□ -1.91
HNF4AP41235 CKS1BP3-201ENST00000600888 237 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 AL136363.2-201ENST00000604173 851 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 AC015540.1-201ENST00000615828 501 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 AC068792.1-201ENST00000621354 417 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 AL158801.5-201ENST00000623123 465 ntBASIC3.1□□□□□ -1.91
HNF4AP41235 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.1□□□□□ -1.91
HNF4AP41235 AC008264.2-201ENST00000610193 3731 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
HNF4AP41235 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
HNF4AP41235 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HNF4AP41235 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HNF4AP41235 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.09□□□□□ -1.91
HNF4AP41235 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.09□□□□□ -1.91
HNF4AP41235 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HNF4AP41235 Y_RNA.3-201ENST00000362331 103 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 RNA5SP267-201ENST00000364893 126 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.09□□□□□ -1.91
HNF4AP41235 RNU6-533P-201ENST00000384144 107 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 SNORA40.3-201ENST00000390964 122 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 FO393413.1-201ENST00000402892 195 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AL357075.1-201ENST00000404107 726 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 RNU2-66P-201ENST00000410650 161 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 Y_RNA.619-201ENST00000410951 90 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 HMGN1P14-201ENST00000412459 517 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AF274854.1-201ENST00000413236 615 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 RPL7P10-201ENST00000417407 739 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.09□□□□□ -1.91
HNF4AP41235 AL358075.3-201ENST00000426289 226 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 MTCO3P45-201ENST00000443036 613 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AC091153.1-201ENST00000466297 402 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HNF4AP41235 RPS15AP36-201ENST00000492022 382 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.09□□□□□ -1.91
HNF4AP41235 RNA5SP385-201ENST00000515947 110 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.09□□□□□ -1.91
HNF4AP41235 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.09□□□□□ -1.91
HNF4AP41235 AL391261.3-201ENST00000557194 520 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.09□□□□□ -1.91
HNF4AP41235 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.09□□□□□ -1.91
HNF4AP41235 AC010546.1-201ENST00000569391 485 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 MIR2682-201ENST00000580305 110 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 MIR4506-201ENST00000584693 77 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.09□□□□□ -1.91
HNF4AP41235 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.09□□□□□ -1.91
HNF4AP41235 AL137843.1-201ENST00000605078 385 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AC098614.4-201ENST00000607601 462 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AC006566.1-201ENST00000608943 513 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 AC131902.3-201ENST00000611767 581 ntBASIC3.09□□□□□ -1.91
HNF4AP41235 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.09□□□□□ -1.92
HNF4AP41235 CR848007.1-201ENST00000442354 1699 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HNF4AP41235 RNU6-140P-201ENST00000384566 108 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 MIR34B-201ENST00000385076 84 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 RPL21P3-201ENST00000395517 478 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 MIR887-201ENST00000401258 79 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 Y_RNA.598-201ENST00000410480 95 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 RNU6-248P-201ENST00000410720 107 ntBASIC3.08□□□□□ -1.92
HNF4AP41235 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms