Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC128657.1-201ENST00000549459 145 ntBASIC2.88□□□□□ -1.95
SOX3P41225 SYF2P1-201ENST00000550658 413 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.88□□□□□ -1.95
SOX3P41225 AP005205.1-201ENST00000563503 508 ntBASIC2.88□□□□□ -1.95
SOX3P41225 RPL23AP84-201ENST00000571193 464 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.88□□□□□ -1.95
SOX3P41225 AC005951.2-201ENST00000576282 495 ntBASIC2.88□□□□□ -1.95
SOX3P41225 MIR3167-201ENST00000579623 85 ntBASIC2.88□□□□□ -1.95
SOX3P41225 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.88□□□□□ -1.95
SOX3P41225 AL161729.4-201ENST00000604650 476 ntBASIC2.88□□□□□ -1.95
SOX3P41225 AL139286.2-201ENST00000606838 396 ntBASIC2.88□□□□□ -1.95
SOX3P41225 SDR42E1P2-201ENST00000614861 481 ntBASIC2.88□□□□□ -1.95
SOX3P41225 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SOX3P41225 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.88□□□□□ -1.95
SOX3P41225 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SOX3P41225 AL079305.1-201ENST00000623159 3008 ntBASIC2.88□□□□□ -1.95
SOX3P41225 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
SOX3P41225 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.88□□□□□ -1.95
SOX3P41225 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.88□□□□□ -1.95
SOX3P41225 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SOX3P41225 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
SOX3P41225 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.87□□□□□ -1.95
SOX3P41225 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
SOX3P41225 OR5J1P-201ENST00000313544 939 ntBASIC2.87□□□□□ -1.95
SOX3P41225 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.87□□□□□ -1.95
SOX3P41225 RNU6-1042P-201ENST00000384204 107 ntBASIC2.87□□□□□ -1.95
SOX3P41225 SNORD15B-201ENST00000384714 146 ntBASIC2.87□□□□□ -1.95
SOX3P41225 MIR514A1-201ENST00000385133 98 ntBASIC2.87□□□□□ -1.95
SOX3P41225 Y_RNA.582-201ENST00000391023 95 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RPS3AP36-201ENST00000398190 775 ntBASIC2.87□□□□□ -1.95
SOX3P41225 MIR1290-201ENST00000408735 78 ntBASIC2.87□□□□□ -1.95
SOX3P41225 U3.42-201ENST00000408746 214 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RNU2-66P-201ENST00000410650 161 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.87□□□□□ -1.95
SOX3P41225 YPEL5P1-201ENST00000419731 367 ntBASIC2.87□□□□□ -1.95
SOX3P41225 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.87□□□□□ -1.95
SOX3P41225 PIGFP2-201ENST00000421400 651 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.87□□□□□ -1.95
SOX3P41225 UBE2D3P2-201ENST00000424409 445 ntBASIC2.87□□□□□ -1.95
SOX3P41225 USP9YP36-201ENST00000424581 829 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC007283.2-201ENST00000424739 197 ntBASIC2.87□□□□□ -1.95
SOX3P41225 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.87□□□□□ -1.95
SOX3P41225 ARPC3P1-201ENST00000437218 533 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.87□□□□□ -1.95
SOX3P41225 AC140076.1-201ENST00000449897 361 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.87□□□□□ -1.95
SOX3P41225 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.87□□□□□ -1.95
SOX3P41225 AL359385.1-201ENST00000456509 365 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RPL27AP5-201ENST00000469428 449 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RPS27AP1-201ENST00000475545 471 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RBM43P1-201ENST00000476891 1081 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RPS29P2-201ENST00000479278 136 ntBASIC2.87□□□□□ -1.95
SOX3P41225 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.87□□□□□ -1.95
SOX3P41225 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.87□□□□□ -1.95
SOX3P41225 AC008885.1-201ENST00000514930 301 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RNU2-10P-201ENST00000516375 211 ntBASIC2.87□□□□□ -1.95
SOX3P41225 RNU6-430P-201ENST00000517078 107 ntBASIC2.87□□□□□ -1.95
SOX3P41225 NRON-201ENST00000517270 370 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.87□□□□□ -1.95
SOX3P41225 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.87□□□□□ -1.95
SOX3P41225 AC087883.1-201ENST00000551882 391 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 AL355836.1-201ENST00000555951 870 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.87□□□□□ -1.95
SOX3P41225 AC245014.2-201ENST00000603689 287 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC091805.2-201ENST00000603848 235 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AL160281.1-201ENST00000605307 311 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC246785.4-201ENST00000605374 287 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC005332.10-201ENST00000612725 619 ntBASIC2.87□□□□□ -1.95
SOX3P41225 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.87□□□□□ -1.95
SOX3P41225 AC099842.1-201ENST00000619919 596 ntBASIC2.87□□□□□ -1.95
SOX3P41225 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SOX3P41225 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.87□□□□□ -1.95
SOX3P41225 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SOX3P41225 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
SOX3P41225 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
SOX3P41225 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.87□□□□□ -1.95
SOX3P41225 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.86□□□□□ -1.95
SOX3P41225 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SOX3P41225 AC002546.1-201ENST00000588041 2504 ntBASIC2.86□□□□□ -1.95
SOX3P41225 RNA5SP295-201ENST00000362655 121 ntBASIC2.86□□□□□ -1.95
SOX3P41225 SNORA51.4-201ENST00000364993 124 ntBASIC2.86□□□□□ -1.95
SOX3P41225 RNU6-169P-201ENST00000365336 107 ntBASIC2.86□□□□□ -1.95
SOX3P41225 SNORA20.2-201ENST00000383922 131 ntBASIC2.86□□□□□ -1.95
SOX3P41225 MIR23A-201ENST00000385245 73 ntBASIC2.86□□□□□ -1.95
SOX3P41225 SNORD67-201ENST00000390833 111 ntBASIC2.86□□□□□ -1.95
SOX3P41225 RN7SKP140-201ENST00000411196 284 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.86□□□□□ -1.95
SOX3P41225 ELOCP4-201ENST00000420090 333 ntBASIC2.86□□□□□ -1.95
SOX3P41225 TRIAP1P1-201ENST00000427062 225 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AC010975.2-201ENST00000427781 588 ntBASIC2.86□□□□□ -1.95
SOX3P41225 OR2B8P-201ENST00000432841 938 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.86□□□□□ -1.95
SOX3P41225 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms