Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC117503.1-201ENST00000472241 394 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AC010631.1-201ENST00000474150 156 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AP001086.1-201ENST00000494882 321 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.03□□□□□ -1.76
MSX2P35548 RNU2-69P-201ENST00000516061 100 ntBASIC4.03□□□□□ -1.76
MSX2P35548 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX2P35548 AC006064.5-201ENST00000541782 248 ntBASIC4.03□□□□□ -1.76
MSX2P35548 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX2P35548 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX2P35548 AC006254.3-201ENST00000603353 884 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AL031176.1-201ENST00000604554 466 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AC009229.3-201ENST00000608056 282 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.03□□□□□ -1.76
MSX2P35548 AL021997.2-201ENST00000615674 271 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AL162373.1-201ENST00000620433 407 ntBASIC4.03□□□□□ -1.76
MSX2P35548 AL732372.2-225ENST00000642124 456 ntBASIC4.03□□□□□ -1.76
MSX2P35548 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
MSX2P35548 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX2P35548 AP001486.2-201ENST00000561652 5113 ntBASIC4.03□□□□□ -1.77
MSX2P35548 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.77
MSX2P35548 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
MSX2P35548 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
MSX2P35548 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
MSX2P35548 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
MSX2P35548 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 RNU6-128P-201ENST00000383976 107 ntBASIC4.02□□□□□ -1.77
MSX2P35548 RNU6-701P-201ENST00000384059 107 ntBASIC4.02□□□□□ -1.77
MSX2P35548 RNU6-393P-201ENST00000384475 107 ntBASIC4.02□□□□□ -1.77
MSX2P35548 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.02□□□□□ -1.77
MSX2P35548 MIR3065-201ENST00000390137 79 ntBASIC4.02□□□□□ -1.77
MSX2P35548 CYB5AP4-201ENST00000396692 399 ntBASIC4.02□□□□□ -1.77
MSX2P35548 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.02□□□□□ -1.77
MSX2P35548 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.02□□□□□ -1.77
MSX2P35548 AL391219.1-201ENST00000422570 483 ntBASIC4.02□□□□□ -1.77
MSX2P35548 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 CBX3P6-201ENST00000430257 527 ntBASIC4.02□□□□□ -1.77
MSX2P35548 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.02□□□□□ -1.77
MSX2P35548 AC009220.1-201ENST00000451614 275 ntBASIC4.02□□□□□ -1.77
MSX2P35548 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.02□□□□□ -1.77
MSX2P35548 RPL7P23-201ENST00000493874 747 ntBASIC4.02□□□□□ -1.77
MSX2P35548 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.02□□□□□ -1.77
MSX2P35548 Y_RNA.670-201ENST00000516255 105 ntBASIC4.02□□□□□ -1.77
MSX2P35548 Y_RNA.708-201ENST00000516950 96 ntBASIC4.02□□□□□ -1.77
MSX2P35548 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 AL360157.1-201ENST00000565962 87 ntBASIC4.02□□□□□ -1.77
MSX2P35548 BNIP3P16-201ENST00000589779 534 ntBASIC4.02□□□□□ -1.77
MSX2P35548 AL670379.4-201ENST00000605279 254 ntBASIC4.02□□□□□ -1.77
MSX2P35548 AC011890.2-201ENST00000613393 294 ntBASIC4.02□□□□□ -1.77
MSX2P35548 RN7SL722P-201ENST00000617780 284 ntBASIC4.02□□□□□ -1.77
MSX2P35548 RN7SL565P-201ENST00000618246 284 ntBASIC4.02□□□□□ -1.77
MSX2P35548 MIR6810-201ENST00000622701 70 ntBASIC4.02□□□□□ -1.77
MSX2P35548 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.02□□□□□ -1.77
MSX2P35548 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
MSX2P35548 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.02□□□□□ -1.77
MSX2P35548 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.02□□□□□ -1.77
MSX2P35548 NOL8P1-201ENST00000508336 3529 ntBASIC4.02□□□□□ -1.77
MSX2P35548 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
MSX2P35548 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.01□□□□□ -1.77
MSX2P35548 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSX2P35548 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
MSX2P35548 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSX2P35548 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSX2P35548 RNU6-715P-201ENST00000365204 103 ntBASIC4.01□□□□□ -1.77
MSX2P35548 RNU6-784P-201ENST00000384330 106 ntBASIC4.01□□□□□ -1.77
MSX2P35548 Y_RNA.473-201ENST00000384333 102 ntBASIC4.01□□□□□ -1.77
MSX2P35548 MIR141-201ENST00000384975 95 ntBASIC4.01□□□□□ -1.77
MSX2P35548 Y_RNA.594-201ENST00000410373 140 ntBASIC4.01□□□□□ -1.77
MSX2P35548 RNU6-1050P-201ENST00000410388 107 ntBASIC4.01□□□□□ -1.77
MSX2P35548 RN7SKP106-201ENST00000410832 272 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.01□□□□□ -1.77
MSX2P35548 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.01□□□□□ -1.77
MSX2P35548 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.01□□□□□ -1.77
MSX2P35548 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.01□□□□□ -1.77
MSX2P35548 HIGD1AP11-201ENST00000438361 280 ntBASIC4.01□□□□□ -1.77
MSX2P35548 HMGB1P12-201ENST00000438594 598 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.01□□□□□ -1.77
MSX2P35548 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.01□□□□□ -1.77
MSX2P35548 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.01□□□□□ -1.77
MSX2P35548 AC087884.1-201ENST00000469738 328 ntBASIC4.01□□□□□ -1.77
MSX2P35548 RN7SL738P-201ENST00000470264 297 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AC103987.1-201ENST00000473394 348 ntBASIC4.01□□□□□ -1.77
MSX2P35548 RPL12P20-201ENST00000475538 479 ntBASIC4.01□□□□□ -1.77
MSX2P35548 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.01□□□□□ -1.77
MSX2P35548 CEACAMP10-202ENST00000495431 496 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.01□□□□□ -1.77
MSX2P35548 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.01□□□□□ -1.77
MSX2P35548 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.01□□□□□ -1.77
MSX2P35548 IGKV2-38-201ENST00000517443 247 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.01□□□□□ -1.77
MSX2P35548 MIR4330-201ENST00000579077 105 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AC079587.1-201ENST00000603846 277 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AC018462.2-201ENST00000605375 395 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms