Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.96□□□□□ -1.78
COL3A1P02461 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.96□□□□□ -1.78
COL3A1P02461 AC087241.2-201ENST00000535801 324 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.96□□□□□ -1.78
COL3A1P02461 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.96□□□□□ -1.78
COL3A1P02461 AL451007.1-201ENST00000595491 289 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 AC136443.5-201ENST00000603741 370 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.96□□□□□ -1.78
COL3A1P02461 AL356585.4-201ENST00000623078 1229 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
COL3A1P02461 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.96□□□□□ -1.78
COL3A1P02461 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL3A1P02461 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
COL3A1P02461 RNU6-805P-201ENST00000365643 106 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 SNORA32.2-201ENST00000384049 122 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 RNU6-456P-201ENST00000384493 107 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 RNU6-907P-201ENST00000390924 102 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AL121972.1-201ENST00000402023 252 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 RNU6-1068P-201ENST00000410958 103 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 RNU6-272P-201ENST00000411028 104 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.95□□□□□ -1.78
COL3A1P02461 AC245291.1-201ENST00000419501 328 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.95□□□□□ -1.78
COL3A1P02461 AL606489.2-201ENST00000433886 234 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AC025750.2-201ENST00000442609 450 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AC090096.1-201ENST00000489168 390 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AC091826.1-201ENST00000514065 313 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AP003181.2-201ENST00000528941 181 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AP002404.1-201ENST00000532005 451 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AC023050.3-201ENST00000541142 333 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.95□□□□□ -1.78
COL3A1P02461 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.95□□□□□ -1.78
COL3A1P02461 AC011468.4-201ENST00000603942 409 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 BCRP9-201ENST00000605312 388 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AC104237.2-201ENST00000612456 443 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 C2orf27A-204ENST00000623058 969 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 AC009161.2-201ENST00000624626 138 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 AC093311.1-201ENST00000506586 2021 ntBASIC3.95□□□□□ -1.78
COL3A1P02461 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL3A1P02461 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL3A1P02461 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL3A1P02461 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL3A1P02461 RNU6-251P-201ENST00000363235 104 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 SNORA9.2-201ENST00000365361 133 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 SNORA33.2-201ENST00000365413 134 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 RNU6-359P-201ENST00000365466 108 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL3A1P02461 RPL23AP32-201ENST00000395315 459 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 RPS20P2-201ENST00000402520 389 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.94□□□□□ -1.78
COL3A1P02461 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC073136.2-201ENST00000417282 849 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.94□□□□□ -1.78
COL3A1P02461 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.94□□□□□ -1.78
COL3A1P02461 GTF2IP13-201ENST00000438487 386 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 BNIP3P2-201ENST00000441221 577 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 AL591623.2-201ENST00000449978 222 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AC239809.1-201ENST00000450470 217 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 TRGVB-201ENST00000453257 471 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.94□□□□□ -1.78
COL3A1P02461 RNU7-27P-201ENST00000459281 62 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 Y_RNA.631-201ENST00000459607 101 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 RPL21P8-201ENST00000465083 535 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.94□□□□□ -1.78
COL3A1P02461 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL3A1P02461 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC110792.2-201ENST00000510278 224 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 ELOCP31-201ENST00000540463 467 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC090751.1-201ENST00000566966 267 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AC007390.2-201ENST00000606229 3803 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AL591516.1-201ENST00000611326 274 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC078899.5-201ENST00000612475 178 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC145207.9-201ENST00000623802 325 ntBASIC3.94□□□□□ -1.78
COL3A1P02461 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.94□□□□□ -1.78
COL3A1P02461 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.94□□□□□ -1.78
COL3A1P02461 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL3A1P02461 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.94□□□□□ -1.78
COL3A1P02461 AC025125.1-201ENST00000624743 1922 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.93□□□□□ -1.78
COL3A1P02461 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
COL3A1P02461 Y_RNA.381-201ENST00000365666 102 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms