Protein–RNA interactions for Protein: Q9Z0Y9

Nr1h3, Oxysterols receptor LXR-alpha, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h3Q9Z0Y9 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Nr1h3Q9Z0Y9 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Nr1h3Q9Z0Y9 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.58■□□□□ 0.41
Nr1h3Q9Z0Y9 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Nr1h3Q9Z0Y9 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Nr1h3Q9Z0Y9 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
Nr1h3Q9Z0Y9 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Nr1h3Q9Z0Y9 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Nr1h3Q9Z0Y9 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Nr1h3Q9Z0Y9 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Nr1h3Q9Z0Y9 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Gm10060-201ENSMUST00000212002 111 ntBASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Nr1h3Q9Z0Y9 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Nr1h3Q9Z0Y9 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms