Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Slc35b2-202ENSMUST00000223987 1766 ntBASIC12.23□□□□□ -0.45
Col6a5A6H584 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Gm37194-201ENSMUST00000193092 3031 ntBASIC12.23□□□□□ -0.45
Col6a5A6H584 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Col6a5A6H584 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Gm28631-201ENSMUST00000190740 334 ntBASIC12.23□□□□□ -0.45
Col6a5A6H584 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.23□□□□□ -0.45
Col6a5A6H584 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col6a5A6H584 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.22□□□□□ -0.45
Col6a5A6H584 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Gm45203-201ENSMUST00000206384 1831 ntBASIC12.22□□□□□ -0.45
Col6a5A6H584 Gm11453-201ENSMUST00000117318 1007 ntBASIC12.22□□□□□ -0.45
Col6a5A6H584 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Gm20553-201ENSMUST00000204205 844 ntBASIC12.22□□□□□ -0.45
Col6a5A6H584 Gm45167-201ENSMUST00000208007 322 ntBASIC12.22□□□□□ -0.45
Col6a5A6H584 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC12.22□□□□□ -0.45
Col6a5A6H584 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC12.22□□□□□ -0.45
Col6a5A6H584 Gm7787-201ENSMUST00000216858 688 ntBASIC12.22□□□□□ -0.45
Col6a5A6H584 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col6a5A6H584 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Col6a5A6H584 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col6a5A6H584 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col6a5A6H584 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col6a5A6H584 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col6a5A6H584 Gm8344-201ENSMUST00000119813 856 ntBASIC12.21□□□□□ -0.45
Col6a5A6H584 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Col6a5A6H584 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col6a5A6H584 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col6a5A6H584 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Gm5366-201ENSMUST00000215494 1338 ntBASIC12.21□□□□□ -0.46
Col6a5A6H584 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.46
Col6a5A6H584 Gm12151-201ENSMUST00000121374 290 ntBASIC12.21□□□□□ -0.46
Col6a5A6H584 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col6a5A6H584 Gm27989-201ENSMUST00000184721 107 ntBASIC12.21□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms