Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC116337.2-201ENST00000477662 156 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 NRON-201ENST00000517270 370 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AP003122.4-201ENST00000530980 758 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AL355836.1-201ENST00000555951 870 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC011471.1-201ENST00000585766 187 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 Z94722.1-201ENST00000604328 474 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC112191.3-201ENST00000604371 277 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AL160281.1-201ENST00000605307 311 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC004832.5-201ENST00000608677 401 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 BX664608.1-201ENST00000610519 487 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC013476.2-201ENST00000614456 459 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 SDR42E1P2-201ENST00000614861 481 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC010133.1-201ENST00000615809 842 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC091953.2-201ENST00000623979 160 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC010149.2-201ENST00000637608 315 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 AC099654.13-201ENST00000639774 207 ntBASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.17□□□□□ -1.9
CPSF3Q9UKF6 API5P2-201ENST00000397055 1498 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 U3.4-201ENST00000363352 213 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 RPL5P18-201ENST00000406671 891 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 MIR1289-1-201ENST00000408836 144 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 SDCBPP3-201ENST00000419629 891 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 MTND1P28-201ENST00000435623 950 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 MTATP6P30-201ENST00000443540 664 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 TAF9P1-201ENST00000445421 515 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 SNRPGP6-201ENST00000451124 220 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 TAF9P2-201ENST00000454958 515 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC108059.3-201ENST00000456388 214 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 RN7SL75P-201ENST00000461926 281 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC010631.1-201ENST00000474150 156 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 RPS3AP14-201ENST00000483907 780 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 SCGB1D5P-201ENST00000515134 247 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 RNU6-1282P-201ENST00000516735 96 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC022878.1-201ENST00000530684 149 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AL356057.1-201ENST00000533798 831 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC107016.2-201ENST00000547968 190 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC124947.2-202ENST00000552735 133 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 HMGB1P6-201ENST00000569046 646 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 MIR3118-1-201ENST00000581787 76 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AL590229.1-201ENST00000603497 542 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC239868.4-201ENST00000608318 671 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC009878.1-201ENST00000621819 340 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 AC025048.6-202ENST00000627667 438 ntBASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CPSF3Q9UKF6 RNY4P16-201ENST00000364768 94 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 NDUFB4P4-201ENST00000404822 243 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 MIR1302-8-201ENST00000408342 128 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 RN7SKP123-201ENST00000410732 291 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 RN7SKP140-201ENST00000411196 284 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AL451054.2-201ENST00000420896 202 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 HMGN2P30-201ENST00000423237 256 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC092573.2-201ENST00000434546 243 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC129850.1-201ENST00000436203 508 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC107083.1-201ENST00000439643 279 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 MTND2P24-201ENST00000453434 806 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 SNRPGP9-201ENST00000456025 225 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 RPS29P12-201ENST00000460178 152 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 RPS20P20-201ENST00000460498 340 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 CDC42P4-201ENST00000510507 563 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 OR5BM1P-201ENST00000512021 366 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 AP003181.2-201ENST00000528941 181 ntBASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.15□□□□□ -1.91
CPSF3Q9UKF6 EIF4BP1-201ENST00000554881 351 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms