Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KLF3P2-201ENST00000465138 268 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 SAP18P1-201ENST00000512058 390 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 RNU7-51P-201ENST00000516560 62 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 RNU6-1282P-201ENST00000516735 96 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 RNU6-1092P-201ENST00000516955 87 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AP006587.4-201ENST00000526053 529 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 ATP5F1P5-201ENST00000526403 760 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AP002963.1-201ENST00000530590 184 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AL163153.1-201ENST00000554223 283 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 RPS3AP4-201ENST00000555161 764 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC034105.3-201ENST00000565294 442 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC034105.4-201ENST00000568304 277 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 MIR3913-1-201ENST00000577744 102 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 MIR4528-201ENST00000577763 90 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 MIR3609-201ENST00000582661 80 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC011939.3-201ENST00000613686 466 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC138932.5-201ENST00000617759 563 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AC034229.5-201ENST00000624258 185 ntBASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.38□□□□□ -1.87
LIMA1Q9UHB6 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AL353743.1-202ENST00000431724 1695 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 OR5J1P-201ENST00000313544 939 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC073325.2-201ENST00000339545 159 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 RNU6-39P-201ENST00000384344 107 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 MIR200C-201ENST00000384980 68 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 RNA5SP274-201ENST00000410484 108 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC012498.1-201ENST00000424037 437 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 GOT2P5-201ENST00000433995 546 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC244505.4-201ENST00000434905 287 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC092473.1-201ENST00000441098 221 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 SSXP5-201ENST00000443473 287 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AL136380.1-201ENST00000447970 162 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 HMGN2P13-201ENST00000476476 274 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC092185.1-201ENST00000491371 97 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC110794.1-201ENST00000505816 425 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC010265.1-201ENST00000513509 211 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 SNORA31.1-201ENST00000515993 133 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 SNORA31.3-201ENST00000516029 96 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 SNORA31.5-201ENST00000516190 133 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC012213.3-201ENST00000577199 777 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC079089.3-201ENST00000603094 673 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC007619.2-201ENST00000605743 379 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC098614.4-201ENST00000607601 462 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AL138880.2-201ENST00000616214 239 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AL589994.2-201ENST00000621124 579 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 AC244100.1-202ENST00000621554 382 ntBASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
LIMA1Q9UHB6 CR848007.1-201ENST00000442354 1699 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AL079305.1-201ENST00000623159 3008 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RNY1P12-201ENST00000364251 105 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 DEFB108C-201ENST00000400154 252 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 BTF3L4P3-201ENST00000418879 476 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RPL31P35-201ENST00000431058 377 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 HIGD1AP11-201ENST00000438361 280 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RPS24P1-201ENST00000438550 371 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 HMGB3P12-201ENST00000438745 556 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 NEFMP1-201ENST00000443423 1006 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AC087588.1-201ENST00000462203 316 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RPL21P10-201ENST00000463521 490 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RN7SL293P-201ENST00000481765 281 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RN7SL633P-201ENST00000488974 297 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 Y_RNA.655-201ENST00000515919 96 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RNU6-1220P-201ENST00000517126 108 ntBASIC3.36□□□□□ -1.87
LIMA1Q9UHB6 RNU6-711P-201ENST00000517255 106 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms