Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC004852.3-201ENST00000614131 326 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AL356266.1-201ENST00000623311 483 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC006927.3-201ENST00000638789 384 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.71□□□□□ -1.97
LHX3Q9UBR4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.71□□□□□ -1.97
LHX3Q9UBR4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 RNU6-859P-201ENST00000362728 107 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 Y_RNA.510-201ENST00000384511 114 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 RPS20P2-201ENST00000402520 389 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 RNA5SP184-201ENST00000411071 108 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 SDCBPP3-201ENST00000419629 891 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 NUP35P1-201ENST00000422734 947 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC244035.1-201ENST00000430042 390 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 MTND5P25-201ENST00000430499 799 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC009969.1-201ENST00000438726 172 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC004263.1-201ENST00000479327 332 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC233702.1-201ENST00000482905 502 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC138853.1-201ENST00000503549 823 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 RNU6-927P-201ENST00000516199 100 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC008015.1-201ENST00000555505 465 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AL356432.3-201ENST00000568952 465 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 U73023.1-201ENST00000603134 700 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 MTCYBP22-201ENST00000603788 447 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC136601.2-201ENST00000604356 474 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 OR2AS2P-201ENST00000606902 342 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC245517.5-201ENST00000611529 162 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AC091304.6-201ENST00000619761 202 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 CR381653.2-201ENST00000624041 768 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 AL136313.1-201ENST00000624804 202 ntBASIC2.71□□□□□ -1.98
LHX3Q9UBR4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.71□□□□□ -1.98
LHX3Q9UBR4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 RNU6-501P-201ENST00000364072 100 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 MIR34A-201ENST00000385130 110 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 MIR634-201ENST00000385208 97 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL359634.1-202ENST00000404721 284 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 BMS1P22-201ENST00000414726 313 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 NDUFB4P5-201ENST00000415445 361 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC019097.1-201ENST00000424783 735 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC063976.3-201ENST00000426849 329 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 TIMM9P1-201ENST00000436122 256 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 MTATP6P30-201ENST00000443540 664 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 GDI2P2-201ENST00000445131 608 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AP000936.2-201ENST00000447151 681 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL109933.2-201ENST00000452651 260 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC013267.1-201ENST00000458227 267 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC068587.2-201ENST00000478386 781 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC103975.1-201ENST00000482506 483 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 RAC1P5-201ENST00000512182 576 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 RNU6-201P-201ENST00000517100 61 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 MIR4635-201ENST00000583759 79 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 MIR4293-201ENST00000584305 78 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 MIR4506-201ENST00000584693 77 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 KC877982.1-201ENST00000602313 470 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL035413.2-201ENST00000604801 525 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL136363.1-201ENST00000605349 337 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC018638.7-201ENST00000605836 1114 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC239868.4-201ENST00000608318 671 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms