Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL133412.1-201ENST00000380194 2992 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 RPL32P3-201ENST00000359025 275 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 Y_RNA.315-201ENST00000365117 102 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 PPIAP31-201ENST00000405422 495 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR1302-11-201ENST00000408051 138 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR1302-9-201ENST00000408365 138 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR548K-201ENST00000408406 116 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR548F5-201ENST00000408421 86 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR1302-10-201ENST00000408734 138 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 RNA5SP129-201ENST00000410276 118 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 RNU2-33P-201ENST00000410344 192 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 RPL37P10-201ENST00000412884 288 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AL157831.1-201ENST00000426134 473 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC009237.8-201ENST00000445492 379 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 TPT1P12-201ENST00000448968 492 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC109327.1-201ENST00000471666 403 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC091167.1-201ENST00000492017 396 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 PARP4P3-201ENST00000510265 317 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC008716.1-201ENST00000511084 513 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 RNU6-559P-201ENST00000516151 98 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 Y_RNA.701-201ENST00000516812 110 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 RNU6-1088P-201ENST00000516850 104 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC087854.1-201ENST00000519706 414 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 RNU6-323P-201ENST00000521915 107 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 OR5D17P-201ENST00000531492 978 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AL157871.3-201ENST00000557231 293 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC138761.3-201ENST00000579993 334 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR3672-201ENST00000584290 82 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR5692C1-201ENST00000585309 91 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC025946.2-201ENST00000603398 234 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC106900.2-201ENST00000604994 317 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 MIR1302-2-201ENST00000607096 138 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC083809.1-201ENST00000615051 472 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC090132.2-201ENST00000615881 347 ntBASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRIM39Q9HCM9 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 SNORA4.3-201ENST00000365564 137 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 MIR1911-201ENST00000410783 80 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 RPL23AP26-201ENST00000412728 464 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 CRYBB2P1-203ENST00000415709 538 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 FTH1P6-201ENST00000430768 320 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC073063.1-201ENST00000434352 607 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 HSFY6P-201ENST00000445573 403 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 RPL23AP81-201ENST00000455252 467 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 MTND4P17-201ENST00000470444 350 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 VN1R17P-201ENST00000472048 1090 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 RPL7P43-201ENST00000478876 753 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC083829.1-201ENST00000503756 657 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 RNA5SP73-201ENST00000516744 108 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC069240.1-201ENST00000548774 375 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 IPO5P1-202ENST00000600039 287 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AL139395.1-201ENST00000603662 160 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 APOOP1-201ENST00000604695 592 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AL354984.3-201ENST00000604803 325 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC245389.1-201ENST00000605141 529 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 AC126177.8-201ENST00000618339 1015 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 MIR6810-201ENST00000622701 70 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 MIR3653-201ENST00000625572 110 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 MIR6830-201ENST00000636015 70 ntBASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TRIM39Q9HCM9 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms