Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC000403.1-201ENST00000613696 3585 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 RNU6-511P-201ENST00000363496 107 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 RNU4-24P-201ENST00000364565 139 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 SNORA54-201ENST00000384281 123 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 RPL23AP32-201ENST00000395315 459 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AL359634.1-202ENST00000404721 284 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 ELOCP17-201ENST00000414751 326 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AL589872.1-201ENST00000426602 288 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC022018.1-201ENST00000430685 241 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 MTCO3P5-201ENST00000433620 714 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 RAP1BP2-201ENST00000478270 544 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC079140.3-201ENST00000511111 550 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 RNU2-46P-201ENST00000517038 113 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC011979.2-201ENST00000527568 352 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AP003072.2-201ENST00000527756 676 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC135279.1-201ENST00000543493 504 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC123904.3-201ENST00000547218 814 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC093012.1-202ENST00000549403 582 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 RPS3AP4-201ENST00000555161 764 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 RSL24D1P11-201ENST00000591045 491 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC119751.7-201ENST00000600494 245 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC090578.1-201ENST00000604955 591 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC103710.2-201ENST00000609912 942 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 SDR42E1P2-201ENST00000614861 481 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 AC010133.1-201ENST00000615809 842 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC3Q9BQI4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 RPL7P26-201ENST00000333817 754 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 RNA5SP383-201ENST00000362934 120 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 U8.3-201ENST00000363321 132 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 U3.11-201ENST00000364476 212 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 RNY3P13-201ENST00000365542 102 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 RPL32P35-201ENST00000415214 394 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 SPA17P1-201ENST00000416656 452 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 ZNF90P2-204ENST00000419323 1075 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC245291.1-201ENST00000419501 328 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AL031667.1-201ENST00000440222 725 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AP003181.2-201ENST00000528941 181 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AL355836.1-201ENST00000555951 870 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 MTCYBP33-201ENST00000575007 1130 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AF038458.1-201ENST00000588406 262 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AC110774.1-201ENST00000623567 2018 ntBASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.01□□□□□ -1.93
CCDC3Q9BQI4 AF117829.1-206ENST00000621883 3802 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 CUL1P1-201ENST00000509510 2425 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 RN7SKP220-201ENST00000410611 288 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL513331.1-201ENST00000411908 397 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 BTF3L4P1-201ENST00000413813 468 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 MTCO2P34-201ENST00000421994 607 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL590383.1-201ENST00000428602 75 ntBASIC3□□□□□ -1.93
CCDC3Q9BQI4 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms