Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-248P-201ENST00000410720 107 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AL663109.1-201ENST00000411498 844 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
USP28Q96RU2 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.11□□□□□ -1.91
USP28Q96RU2 SSXP1-201ENST00000453640 473 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.11□□□□□ -1.91
USP28Q96RU2 RN7SL499P-201ENST00000481141 276 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC011825.1-201ENST00000484967 388 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.11□□□□□ -1.91
USP28Q96RU2 AC117522.3-201ENST00000507974 584 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
USP28Q96RU2 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.11□□□□□ -1.91
USP28Q96RU2 DNAJC8P1-201ENST00000554535 372 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 MIR3913-1-201ENST00000577744 102 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 MIR4528-201ENST00000577763 90 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 MIR4325-201ENST00000583049 90 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.11□□□□□ -1.91
USP28Q96RU2 AC005771.1-201ENST00000585581 349 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC009977.1-201ENST00000586015 570 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC112191.3-201ENST00000604371 277 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC106900.2-201ENST00000604994 317 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC108747.1-201ENST00000609508 535 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC104073.3-201ENST00000610942 955 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC013562.2-201ENST00000611632 603 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 Z99129.1-201ENST00000612510 255 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AL162274.2-201ENST00000614406 332 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AL590099.1-201ENST00000615276 138 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC012150.2-201ENST00000621300 544 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.11□□□□□ -1.91
USP28Q96RU2 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP28Q96RU2 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USP28Q96RU2 AC092447.10-201ENST00000620607 1652 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 AC092125.1-201ENST00000562568 1995 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 SNORA44-201ENST00000384584 132 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 Y_RNA.608-201ENST00000410647 95 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 RNU2-16P-201ENST00000410712 136 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 ATG3P1-201ENST00000419507 911 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AL139281.1-201ENST00000422120 335 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 TMEM167AP1-201ENST00000423409 219 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 MTND4LP10-201ENST00000435146 291 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 PGBD4P3-201ENST00000440731 581 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.1□□□□□ -1.91
USP28Q96RU2 ELOCP30-201ENST00000447108 299 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.1□□□□□ -1.91
USP28Q96RU2 snoU13.8-201ENST00000458890 104 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 snoU109.4-201ENST00000458953 143 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.1□□□□□ -1.91
USP28Q96RU2 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.1□□□□□ -1.91
USP28Q96RU2 AP003033.1-201ENST00000527244 415 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AP003181.2-201ENST00000528941 181 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AP002453.2-201ENST00000533503 320 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 ELOCP31-201ENST00000540463 467 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.1□□□□□ -1.91
USP28Q96RU2 AC123904.2-201ENST00000548059 300 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 SETP7-201ENST00000552169 453 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.1□□□□□ -1.91
USP28Q96RU2 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.1□□□□□ -1.91
USP28Q96RU2 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.1□□□□□ -1.91
USP28Q96RU2 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.1□□□□□ -1.91
USP28Q96RU2 AC090615.1-201ENST00000577519 154 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 TPMTP1-201ENST00000592307 737 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AC078899.3-201ENST00000599065 212 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AC138749.5-201ENST00000611461 208 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 AC116165.2-201ENST00000616705 206 ntBASIC3.1□□□□□ -1.91
USP28Q96RU2 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.1□□□□□ -1.91
USP28Q96RU2 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP28Q96RU2 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.1□□□□□ -1.91
USP28Q96RU2 MTND5P33-201ENST00000571250 1450 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
USP28Q96RU2 RNU6-799P-201ENST00000363567 107 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 Y_RNA.517-201ENST00000384551 106 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 RPS3AP36-201ENST00000398190 775 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 Y_RNA.598-201ENST00000410480 95 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 RNU2-66P-201ENST00000410650 161 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC104651.1-201ENST00000427559 735 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.09□□□□□ -1.91
USP28Q96RU2 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AL135938.1-201ENST00000443141 297 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.09□□□□□ -1.91
USP28Q96RU2 SNORD42A-201ENST00000459584 64 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC034222.1-201ENST00000494052 532 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.09□□□□□ -1.91
USP28Q96RU2 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.09□□□□□ -1.91
USP28Q96RU2 RNU6-1003P-201ENST00000517099 105 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC022878.1-201ENST00000530684 149 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.09□□□□□ -1.91
USP28Q96RU2 MIR5195-201ENST00000583555 115 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 HMGN1P30-201ENST00000589286 268 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 BNIP3P8-201ENST00000597863 560 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms