Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU1-23P-201ENST00000363361 144 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 SNORD56.5-201ENST00000364281 72 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 RNA5SP511-201ENST00000410487 115 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS13AQ96RL7 RNA5SP285-201ENST00000516619 119 ntBASIC0.73□□□□□ -2.29
VPS13AQ96RL7 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.73□□□□□ -2.29
VPS13AQ96RL7 UBE2V1P9-201ENST00000414760 368 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC0.72□□□□□ -2.29
VPS13AQ96RL7 SCARNA1-201ENST00000517138 166 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
VPS13AQ96RL7 PTGES3P2-201ENST00000407942 482 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 RNA5SP25-201ENST00000410815 110 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 AC104472.2-201ENST00000469035 601 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 AC018437.1-201ENST00000492214 406 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 AC010625.1-201ENST00000511296 403 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 BNIP3P26-201ENST00000600827 554 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 YWHAQP7-201ENST00000603536 658 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 AC022387.2-201ENST00000604050 448 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 AC073592.7-201ENST00000623659 507 ntBASIC0.72□□□□□ -2.29
VPS13AQ96RL7 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC0.72□□□□□ -2.29
VPS13AQ96RL7 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.71□□□□□ -2.29
VPS13AQ96RL7 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC0.71□□□□□ -2.3
VPS13AQ96RL7 HMGN2P10-201ENST00000448085 265 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 AC117503.1-201ENST00000472241 394 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.71□□□□□ -2.3
VPS13AQ96RL7 BTF3P12-201ENST00000519620 469 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 MTCO1P47-201ENST00000523889 1271 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC0.71□□□□□ -2.3
VPS13AQ96RL7 AC068050.1-201ENST00000394891 380 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 FTH1P15-201ENST00000406984 280 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 MTRNR2L2-201ENST00000604882 87 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 AL050343.2-201ENST00000607338 280 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 AC140725.3-201ENST00000616193 880 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.71□□□□□ -2.3
VPS13AQ96RL7 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.71□□□□□ -2.3
VPS13AQ96RL7 snoU13.19-201ENST00000459148 104 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 NAP1L1P3-201ENST00000462291 880 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 MRPL42P6-201ENST00000486397 371 ntBASIC0.71□□□□□ -2.3
VPS13AQ96RL7 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC0.7□□□□□ -2.3
VPS13AQ96RL7 Y_RNA.610-201ENST00000410681 103 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 AC079780.1-201ENST00000428259 207 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.7□□□□□ -2.3
VPS13AQ96RL7 RPS15AP11-201ENST00000594193 385 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 AC007785.2-201ENST00000598627 1916 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC0.7□□□□□ -2.3
VPS13AQ96RL7 AL121769.1-201ENST00000469473 401 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 HMGN1P10-201ENST00000474557 553 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC0.7□□□□□ -2.3
VPS13AQ96RL7 RNU6-496P-201ENST00000516145 99 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.7□□□□□ -2.3
VPS13AQ96RL7 MIR4653-201ENST00000585107 83 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 AC010889.1-201ENST00000566193 2666 ntBASIC0.7□□□□□ -2.3
VPS13AQ96RL7 RNU6-146P-201ENST00000384602 108 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AC009901.1-201ENST00000506703 541 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 RNU6-229P-201ENST00000516614 102 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AC011468.4-201ENST00000603942 409 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 RNA5SP347-201ENST00000362445 119 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AL022718.1-201ENST00000412004 84 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AL161651.1-201ENST00000440882 223 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 Z96811.1-201ENST00000445880 108 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC0.69□□□□□ -2.3
VPS13AQ96RL7 RBM43P1-201ENST00000476891 1081 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 ZNF702P-202ENST00000434269 1966 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 RNU2-70P-201ENST00000410718 179 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AC092648.1-201ENST00000425870 423 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.69□□□□□ -2.3
VPS13AQ96RL7 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.69□□□□□ -2.3
VPS13AQ96RL7 EIF4A1P12-201ENST00000551910 141 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AL138976.2-201ENST00000563989 694 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AC106028.5-201ENST00000610332 395 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 Xist_exon1.1-201ENST00000618930 85 ntBASIC0.69□□□□□ -2.3
VPS13AQ96RL7 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC0.68□□□□□ -2.3
VPS13AQ96RL7 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.68□□□□□ -2.3
VPS13AQ96RL7 AP006248.3-201ENST00000623580 594 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
VPS13AQ96RL7 OR4G2P-201ENST00000328113 903 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 Y_RNA.170-201ENST00000363746 110 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 PABPC1P3-201ENST00000469174 459 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 AC092451.1-201ENST00000480211 153 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.68□□□□□ -2.3
VPS13AQ96RL7 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.68□□□□□ -2.3
VPS13AQ96RL7 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
VPS13AQ96RL7 AC008269.2-201ENST00000561915 1105 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 AP002967.1-201ENST00000624203 539 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 AC009452.1-201ENST00000640823 606 ntBASIC0.68□□□□□ -2.3
VPS13AQ96RL7 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.68□□□□□ -2.3
VPS13AQ96RL7 AL355497.1-201ENST00000406262 551 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.67□□□□□ -2.3
VPS13AQ96RL7 AC026801.1-201ENST00000497178 464 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 AC079597.1-201ENST00000624306 508 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 Y_RNA.457-201ENST00000384237 111 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 RNU6-43P-201ENST00000384302 107 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC0.67□□□□□ -2.3
VPS13AQ96RL7 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.67□□□□□ -2.3
VPS13AQ96RL7 AC093510.2-201ENST00000562820 896 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms