Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP001486.1-201ENST00000463339 476 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC010631.1-201ENST00000474150 156 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 SUMO2P6-201ENST00000505273 288 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC087276.1-201ENST00000529659 480 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC023050.2-201ENST00000544968 387 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 VN1R90P-201ENST00000595717 726 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AL049779.4-201ENST00000604500 156 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC107952.2-201ENST00000606048 486 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 FTX_3.1-201ENST00000610451 147 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 AL391262.2-201ENST00000622466 494 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS35Q96QK1 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
VPS35Q96QK1 SNORA5B-201ENST00000363786 132 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 SNORA25.6-201ENST00000364121 118 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 RNU1-138P-201ENST00000384093 164 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 RNA5SP184-201ENST00000411071 108 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AL513477.1-202ENST00000417061 214 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 USP9YP26-201ENST00000421008 661 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC009296.1-201ENST00000443146 155 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 SNORD11.1-201ENST00000459482 85 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 AP000852.1-201ENST00000472460 573 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC103975.1-201ENST00000482506 483 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AL160314.1-201ENST00000490836 438 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC114786.4-201ENST00000508771 728 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 HSPE1P23-201ENST00000509838 286 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 TBCAP3-201ENST00000512475 312 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 MTND5P13-201ENST00000513046 1079 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC114797.1-201ENST00000514003 728 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 RNA5SP282-201ENST00000516355 108 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC123904.3-201ENST00000547218 814 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 MIR4319-201ENST00000577285 85 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 OR2AS2P-201ENST00000606902 342 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 AC091965.4-201ENST00000607691 587 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 TUSC7.1-201ENST00000610969 165 ntBASIC2.64□□□□□ -1.99
VPS35Q96QK1 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
VPS35Q96QK1 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS35Q96QK1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS35Q96QK1 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC119751.3-201ENST00000399720 670 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 RSL24D1P4-201ENST00000400938 484 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AL356057.3-201ENST00000402607 340 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 CCNG1P1-201ENST00000406783 885 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 HMGB1P11-201ENST00000413899 637 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 NUP35P1-201ENST00000422734 947 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 LARP1BP3-201ENST00000437229 869 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC005094.1-201ENST00000440420 368 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 MTATP6P30-201ENST00000443540 664 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AL606517.1-201ENST00000446914 387 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AP000936.2-201ENST00000447151 681 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC055855.1-201ENST00000489563 579 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
VPS35Q96QK1 RNU6-927P-201ENST00000516199 100 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC022634.1-201ENST00000520765 532 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 SUB1P1-201ENST00000524415 382 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC007115.1-201ENST00000546853 234 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 MIR4635-201ENST00000583759 79 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC068790.3-201ENST00000602988 553 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC105148.1-201ENST00000604961 409 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 MTND4LP5-201ENST00000605152 292 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AL050303.3-201ENST00000613704 284 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS35Q96QK1 CCT4P2-201ENST00000233836 1548 ntBASIC2.63□□□□□ -1.99
VPS35Q96QK1 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
VPS35Q96QK1 MTND4P16-201ENST00000466108 1367 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS35Q96QK1 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms