Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 AL137003.2-201ENST00000606924 2538 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 FAM35DP-201ENST00000323387 2712 ntBASIC4.22□□□□□ -1.73
CLIP3Q96DZ5 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.73
CLIP3Q96DZ5 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.21□□□□□ -1.73
CLIP3Q96DZ5 AC004972.1-201ENST00000623934 2209 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.22-201ENST00000362492 102 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 RNU6-1318P-201ENST00000365389 103 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 NDUFS5P1-201ENST00000405668 289 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 RNU4-26P-201ENST00000410270 107 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 RN7SKP58-201ENST00000411010 305 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 RPS20P14-201ENST00000412545 360 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AL137792.2-201ENST00000443484 235 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 DHFRP3-201ENST00000455595 559 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 HMGN2P16-201ENST00000456802 261 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC006512.1-201ENST00000468816 291 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AL135752.1-201ENST00000479477 471 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AP001086.1-201ENST00000494882 321 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 PTP4A1P4-201ENST00000512479 322 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 RN7SKP219-201ENST00000516825 296 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AP001804.3-201ENST00000525146 880 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 APOOP3-201ENST00000536787 586 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC107016.1-201ENST00000550463 337 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 SNRPGP18-201ENST00000553000 214 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 7SK.7-201ENST00000603504 247 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC113403.1-201ENST00000604910 193 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AP000654.2-201ENST00000605633 586 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 uc_338.13-201ENST00000618243 179 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 AC091925.1-201ENST00000623204 462 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 PRO1804-201ENST00000623780 2050 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 DHX9P1-201ENST00000436565 3076 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 LINC02471-203ENST00000641941 4752 ntBASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CLIP3Q96DZ5 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AP004289.2-201ENST00000444413 1457 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC008568.2-201ENST00000623862 2313 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MIR331-201ENST00000362302 94 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.28-201ENST00000362554 111 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.401-201ENST00000383965 117 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RNU6-641P-201ENST00000384006 107 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RNU6-701P-201ENST00000384059 107 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RNU6-784P-201ENST00000384330 106 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MIR3065-201ENST00000390137 79 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RNU6-1304P-201ENST00000411374 106 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AL513331.1-201ENST00000411908 397 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RPL23AP26-201ENST00000412728 464 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 NDUFB4P7-201ENST00000423198 363 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RPL36AP6-201ENST00000435770 321 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.635-201ENST00000459041 101 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RPL21P99-201ENST00000480369 423 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC105137.1-201ENST00000484355 562 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MTND4LP22-201ENST00000508209 276 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RNU6-864P-201ENST00000516256 108 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 RN7SKP258-201ENST00000517151 304 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC103843.2-201ENST00000530523 682 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms