Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AP004289.2-201ENST00000444413 1457 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HPS3Q969F9 NFU1P2-201ENST00000448700 469 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.08□□□□□ -1.76
HPS3Q969F9 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.08□□□□□ -1.76
HPS3Q969F9 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.08□□□□□ -1.76
HPS3Q969F9 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.08□□□□□ -1.76
HPS3Q969F9 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.08□□□□□ -1.76
HPS3Q969F9 RN7SKP209-201ENST00000516888 304 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.08□□□□□ -1.76
HPS3Q969F9 OR5B19P-201ENST00000531766 928 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.08□□□□□ -1.76
HPS3Q969F9 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.08□□□□□ -1.76
HPS3Q969F9 ZNF192P1-203ENST00000565888 810 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 MTCO3P24-201ENST00000572729 782 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.08□□□□□ -1.76
HPS3Q969F9 MIR4444-1-201ENST00000581696 74 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 MIR4444-2-201ENST00000584390 74 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 AC008752.3-201ENST00000588113 712 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.08□□□□□ -1.76
HPS3Q969F9 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.08□□□□□ -1.76
HPS3Q969F9 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HPS3Q969F9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HPS3Q969F9 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
HPS3Q969F9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
HPS3Q969F9 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 RNU6-534P-201ENST00000364877 106 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
HPS3Q969F9 RNU6-1029P-201ENST00000384109 107 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 RNU6-190P-201ENST00000384154 102 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.07□□□□□ -1.76
HPS3Q969F9 RNU2-29P-201ENST00000410423 189 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AC068533.1-201ENST00000418542 415 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.07□□□□□ -1.76
HPS3Q969F9 SNRPEP10-201ENST00000420249 274 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AL445584.1-201ENST00000431451 330 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 ATP5JP1-201ENST00000431631 322 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 GTF2IP20-201ENST00000431663 360 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.07□□□□□ -1.76
HPS3Q969F9 MTND4P25-201ENST00000441039 533 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 CALM1P1-201ENST00000442082 433 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.07□□□□□ -1.76
HPS3Q969F9 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.07□□□□□ -1.76
HPS3Q969F9 RPL7L1P8-201ENST00000469911 741 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 RPL31P60-201ENST00000478450 367 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AC233702.1-201ENST00000482905 502 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 SNORA31.3-201ENST00000516029 96 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 RNA5SP164-201ENST00000516533 110 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 RNU6-1256P-201ENST00000516539 103 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 RNU6-835P-201ENST00000516974 104 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.07□□□□□ -1.76
HPS3Q969F9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.07□□□□□ -1.76
HPS3Q969F9 ATP5F1P5-201ENST00000526403 760 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 RANP3-201ENST00000530970 276 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.07□□□□□ -1.76
HPS3Q969F9 ADI1P3-201ENST00000549509 470 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.07□□□□□ -1.76
HPS3Q969F9 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.07□□□□□ -1.76
HPS3Q969F9 AL121576.1-201ENST00000556055 276 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AC007619.2-201ENST00000605743 379 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 AP001486.3-201ENST00000615334 372 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 AL672296.1-201ENST00000427780 2158 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HPS3Q969F9 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
HPS3Q969F9 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.07□□□□□ -1.76
HPS3Q969F9 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HPS3Q969F9 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HPS3Q969F9 AC093908.1-201ENST00000623125 8092 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.06□□□□□ -1.76
HPS3Q969F9 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HPS3Q969F9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.06□□□□□ -1.76
HPS3Q969F9 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HPS3Q969F9 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HPS3Q969F9 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HPS3Q969F9 AC093536.2-201ENST00000565257 1406 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HPS3Q969F9 RNU6-1287P-201ENST00000362914 107 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 SNORD115-7-201ENST00000365306 82 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 RNU6-1283P-201ENST00000365314 105 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 RNU6-1060P-201ENST00000384664 107 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 RNU6-908P-201ENST00000410160 94 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.06□□□□□ -1.76
HPS3Q969F9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.06□□□□□ -1.76
HPS3Q969F9 MTND4LP11-201ENST00000422184 280 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.06□□□□□ -1.76
HPS3Q969F9 WASF1P1-201ENST00000447560 1131 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 DPPA3P1-201ENST00000448050 469 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 AC087588.1-201ENST00000462203 316 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 RPL23AP62-201ENST00000463396 453 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 RNA5SP401-201ENST00000515920 127 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 AC103843.2-201ENST00000530523 682 ntBASIC4.06□□□□□ -1.76
HPS3Q969F9 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.06□□□□□ -1.76
HPS3Q969F9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC4.06□□□□□ -1.76
HPS3Q969F9 DISC2.1-201ENST00000612827 205 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms