Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL390240.1-201ENST00000612950 384 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC244517.12-201ENST00000623581 663 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-82P-201ENST00000363970 107 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-196P-201ENST00000384315 107 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 RNU2-21P-201ENST00000410368 188 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 DBIP2-201ENST00000419076 262 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC091390.3-201ENST00000426478 338 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 RPL36AP6-201ENST00000435770 321 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC016696.1-201ENST00000446949 318 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 BX510359.1-201ENST00000456973 237 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AL162395.1-201ENST00000457882 422 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 SMURF2P1-201ENST00000514992 481 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 FAM60DP-201ENST00000524174 632 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 COPS8P3-201ENST00000526024 482 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC109635.4-202ENST00000531666 412 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AL137161.1-201ENST00000532231 390 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AP000763.2-201ENST00000540641 163 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 MIR4716-201ENST00000579628 84 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 BNIP3P25-201ENST00000596023 559 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC091925.1-201ENST00000623204 462 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC000123.3-201ENST00000624029 4975 ntBASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.94□□□□□ -1.62
USHBP1Q8N6Y0 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.167-201ENST00000363735 109 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AL136372.1-201ENST00000403060 228 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC113618.1-201ENST00000416747 285 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AL391219.1-201ENST00000422570 483 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC108059.2-201ENST00000434626 151 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 FABP5P14-201ENST00000437273 393 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AL137792.2-201ENST00000443484 235 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 snoU13.24-201ENST00000458998 104 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC010683.1-201ENST00000473673 378 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 ST13P14-201ENST00000474095 734 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC084198.1-201ENST00000477747 402 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-798P-201ENST00000516912 103 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC090136.1-201ENST00000520009 240 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AL133153.1-201ENST00000557756 303 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 MIR4790-201ENST00000577799 79 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC124312.5-201ENST00000604451 268 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 AC113194.1-201ENST00000606037 500 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 MTND5P10-201ENST00000603719 1809 ntBASIC4.93□□□□□ -1.62
USHBP1Q8N6Y0 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 SNORD115-7-201ENST00000365306 82 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AL139396.1-201ENST00000421137 167 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 RPL7L1P1-201ENST00000448259 785 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC106872.2-201ENST00000494303 480 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 HMGB1P21-201ENST00000502313 581 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 AC098591.2-201ENST00000510152 315 ntBASIC4.92□□□□□ -1.62
USHBP1Q8N6Y0 RNA5SP164-201ENST00000516533 110 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms