Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL031666.3-201ENST00000609320 1006 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 uc_338.34-201ENST00000617467 174 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 MIR6864-201ENST00000617935 70 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AL596245.1-201ENST00000618994 362 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 MIR6500-201ENST00000622700 86 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 XPOTP1-201ENST00000443317 2398 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AL161912.2-201ENST00000565707 3007 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.2□□□□□ -1.74
USP39Q53GS9 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP39Q53GS9 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP39Q53GS9 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USP39Q53GS9 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AC016588.2-201ENST00000632484 3021 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
USP39Q53GS9 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.19□□□□□ -1.74
USP39Q53GS9 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP39Q53GS9 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP39Q53GS9 ZNF807-201ENST00000328088 1707 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USP39Q53GS9 RNA5SP52-201ENST00000362448 134 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 SNORA71.3-201ENST00000362582 128 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 RNU6-511P-201ENST00000363496 107 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 SNORD46.1-201ENST00000364139 104 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 Y_RNA.212-201ENST00000364177 102 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 SNORA63.7-201ENST00000365579 123 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
USP39Q53GS9 RNU6-310P-201ENST00000384655 107 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 MIR3074-201ENST00000384885 81 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USP39Q53GS9 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 OR6C66P-201ENST00000414917 930 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 CRYBB2P1-203ENST00000415709 538 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 RPS23P10-201ENST00000416185 486 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.19□□□□□ -1.74
USP39Q53GS9 MTCYBP10-201ENST00000424905 650 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AL445584.1-201ENST00000431451 330 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.19□□□□□ -1.74
USP39Q53GS9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AL591212.2-201ENST00000433923 257 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC005019.1-201ENST00000436455 431 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 USP9YP7-201ENST00000436723 430 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AC104058.1-201ENST00000448028 297 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC104073.1-201ENST00000451988 151 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 USP9YP32-201ENST00000452432 430 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AP001992.1-205ENST00000462248 379 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 RPS20P21-201ENST00000466859 343 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC087385.1-201ENST00000475062 312 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC021382.1-201ENST00000483523 359 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AC005726.1-201ENST00000494679 427 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 RPL39P5-202ENST00000512505 151 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC093853.1-201ENST00000515689 483 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 RN7SKP234-201ENST00000517173 224 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AC006064.5-201ENST00000541782 248 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.19□□□□□ -1.74
USP39Q53GS9 SETP2-201ENST00000553886 926 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AL161670.1-201ENST00000554348 137 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 CYP4A43P-201ENST00000568156 121 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC120057.2-201ENST00000571520 271 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AP001486.3-201ENST00000615334 372 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC007485.1-201ENST00000616755 206 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 uc_338.11-201ENST00000619132 160 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC244100.1-202ENST00000621554 382 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC039056.2-201ENST00000622261 511 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 AC011155.2-201ENST00000623202 216 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.19□□□□□ -1.74
USP39Q53GS9 AL138713.1-201ENST00000624026 2130 ntBASIC4.19□□□□□ -1.74
USP39Q53GS9 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.19□□□□□ -1.74
USP39Q53GS9 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP39Q53GS9 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.19□□□□□ -1.74
USP39Q53GS9 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP39Q53GS9 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 API5P2-201ENST00000397055 1498 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP39Q53GS9 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
USP39Q53GS9 FAM91A3P-201ENST00000456826 2544 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.18□□□□□ -1.74
USP39Q53GS9 RNU6-97P-201ENST00000363387 104 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 Y_RNA.135-201ENST00000363439 95 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 RNA5SP391-201ENST00000363456 119 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 SNORD113-7-201ENST00000363762 77 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 Y_RNA.482-201ENST00000384377 111 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 RNU6-1026P-201ENST00000384465 108 ntBASIC4.18□□□□□ -1.74
USP39Q53GS9 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 179.3 ms