Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 RPS15AP7-201ENST00000439294 405 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC107083.1-201ENST00000439643 279 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC009961.3-201ENST00000449832 765 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 RPL12P25-201ENST00000455592 494 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC010631.1-201ENST00000474150 156 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 MRPS36P2-201ENST00000512569 299 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 MTND2P32-201ENST00000521584 1038 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 ATP5F1P5-201ENST00000526403 760 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC013828.2-201ENST00000532487 235 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 GLYCAM1-201ENST00000546596 285 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC090616.3-201ENST00000582184 217 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC061975.8-201ENST00000587058 721 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC007038.2-201ENST00000608095 740 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC245517.5-201ENST00000611529 162 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC097655.1-201ENST00000635075 318 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC119751.3-201ENST00000399720 670 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 RNA5SP181-201ENST00000410246 98 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 USP9YP26-201ENST00000421008 661 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 MTATP6P30-201ENST00000443540 664 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 ELOCP30-201ENST00000447108 299 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC020550.1-201ENST00000447385 163 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC126182.1-201ENST00000478134 357 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 RPS27P27-201ENST00000498779 255 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC020699.1-201ENST00000505161 445 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC114786.4-201ENST00000508771 728 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC113155.1-201ENST00000511141 769 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC114797.1-201ENST00000514003 728 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC096725.1-201ENST00000514266 313 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 RN7SKP132-201ENST00000516001 208 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AP004247.1-201ENST00000531556 1289 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC068587.4-201ENST00000533893 186 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 MIR5092-201ENST00000583139 88 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 ELOCP29-201ENST00000588193 334 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC060766.3-201ENST00000591442 263 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 VN1R90P-201ENST00000595717 726 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AL355877.2-201ENST00000603670 358 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AL160281.1-201ENST00000605307 311 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC144521.1-201ENST00000607148 956 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AC104237.2-201ENST00000612456 443 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AL607023.1-201ENST00000620045 248 ntBASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC40Q4G0X9 RNU6-859P-201ENST00000362728 107 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 RNU6-525P-201ENST00000363685 104 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 CCNG1P1-201ENST00000406783 885 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 CR769767.1-201ENST00000436337 346 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 ANKRD26P4-201ENST00000455755 950 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 SNORD109B-201ENST00000458961 67 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 RNU7-59P-201ENST00000459101 61 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 SNORD109A-201ENST00000459128 67 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 MRPS17P3-201ENST00000465453 385 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC055855.1-201ENST00000489563 579 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AL160314.1-201ENST00000490836 438 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC011471.1-201ENST00000585766 187 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AL031281.1-201ENST00000604049 488 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 MTND4LP5-201ENST00000605152 292 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 ATP1B3P1-201ENST00000605365 821 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC107952.2-201ENST00000606048 486 ntBASIC2.81□□□□□ -1.96
CCDC40Q4G0X9 AC027449.1-201ENST00000608890 407 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms