Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC137499.1-201ENST00000427602 88 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC010975.2-201ENST00000427781 588 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 RPL23AP69-201ENST00000431134 458 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AL358934.1-201ENST00000432346 324 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 MTCO2P4-201ENST00000517968 247 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 FAM60DP-201ENST00000524174 632 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 PSMA2P1-201ENST00000526365 646 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 TRAV37-201ENST00000553906 342 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 EIF4BP1-201ENST00000554881 351 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC009063.1-201ENST00000563342 702 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC005951.2-201ENST00000576282 495 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 LARP7P3-201ENST00000579888 337 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 MIR4293-201ENST00000584305 78 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC245014.2-201ENST00000603689 287 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AL137843.1-201ENST00000605078 385 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC246785.4-201ENST00000605374 287 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC005332.10-201ENST00000612725 619 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 SNHG22-203ENST00000617833 660 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 AC068880.5-201ENST00000624331 290 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 LRRC77P-213ENST00000637727 880 ntBASIC3.42□□□□□ -1.86
USP41Q3LFD5 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 SNORA36C-201ENST00000384289 132 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 Y_RNA.582-201ENST00000391023 95 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AP000567.1-201ENST00000406413 156 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 COTL1P1-201ENST00000422309 375 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 NEK4P1-201ENST00000433383 879 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 MTCO2P29-201ENST00000465212 189 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 RPS3AP17-201ENST00000472594 777 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AL359273.1-201ENST00000510918 627 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC105914.1-201ENST00000511798 226 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 MIR2276-201ENST00000516886 89 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC011979.2-201ENST00000527568 352 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC022080.3-201ENST00000544433 482 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC128657.1-201ENST00000549459 145 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 ARL2BPP2-201ENST00000550907 489 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC245505.1-201ENST00000556398 224 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC055876.1-202ENST00000567053 138 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AL391840.1-201ENST00000571144 367 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC146944.4-201ENST00000602697 718 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC107294.3-201ENST00000609211 526 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC103710.2-201ENST00000609912 942 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 SDR42E1P2-201ENST00000614861 481 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 AC010133.1-201ENST00000615809 842 ntBASIC3.41□□□□□ -1.86
USP41Q3LFD5 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP41Q3LFD5 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.41□□□□□ -1.86
USP41Q3LFD5 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.4□□□□□ -1.86
USP41Q3LFD5 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
USP41Q3LFD5 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.86
USP41Q3LFD5 RNA5SP383-201ENST00000362934 120 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 U3.11-201ENST00000364476 212 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 RNU6-259P-201ENST00000383999 107 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP41Q3LFD5 RNA5SP229-201ENST00000410809 99 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 AC245291.1-201ENST00000419501 328 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.4□□□□□ -1.87
USP41Q3LFD5 AC018630.2-202ENST00000422992 927 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 AC016696.1-201ENST00000446949 318 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 AL136380.1-201ENST00000447970 162 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 AC140076.1-201ENST00000449897 361 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USP41Q3LFD5 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.4□□□□□ -1.87
USP41Q3LFD5 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.4□□□□□ -1.87
USP41Q3LFD5 SNORA70.16-201ENST00000516390 95 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms