Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 AC002546.1-201ENST00000588041 2504 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 Y_RNA.86-201ENST00000363020 111 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 Y_RNA.157-201ENST00000363638 102 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 SNORD35B-201ENST00000363660 87 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 Y_RNA.160-201ENST00000363677 92 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 RNA5SP479-201ENST00000364858 117 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 RNA5SP366-201ENST00000365454 123 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SF3A1Q15459 MIR514A2-201ENST00000385131 88 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 MIR514A3-201ENST00000385132 88 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 RNU4-25P-201ENST00000410569 230 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.7□□□□□ -1.66
SF3A1Q15459 AC092047.1-201ENST00000424997 240 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC004975.1-201ENST00000428733 208 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 AL590664.1-201ENST00000448065 339 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 RNA5SP246-201ENST00000458909 119 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC012181.1-201ENST00000479895 423 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 RPL29P14-201ENST00000495837 428 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 UBE2CP3-201ENST00000502715 450 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC091885.1-201ENST00000506658 268 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.7□□□□□ -1.66
SF3A1Q15459 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 AC099522.1-202ENST00000514718 367 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 RNU7-143P-201ENST00000516781 65 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AP003122.3-201ENST00000526316 255 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 PSMA2P1-201ENST00000526365 646 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC084851.1-201ENST00000529105 249 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 MIR5692A1-201ENST00000580523 69 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 MIR4424-201ENST00000585257 86 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 BNIP3P10-201ENST00000605360 577 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 AC068831.7-201ENST00000616954 363 ntBASIC4.7□□□□□ -1.66
SF3A1Q15459 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.7□□□□□ -1.66
SF3A1Q15459 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SF3A1Q15459 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SF3A1Q15459 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.7□□□□□ -1.66
SF3A1Q15459 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.69□□□□□ -1.66
SF3A1Q15459 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SF3A1Q15459 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SF3A1Q15459 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
SF3A1Q15459 FTLP6-201ENST00000355274 422 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 Y_RNA.33-201ENST00000362591 102 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 RNU6-393P-201ENST00000384475 107 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 RNU6-332P-201ENST00000391193 108 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 FGF7P8-201ENST00000402994 292 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 MIR1193-201ENST00000408109 78 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 RNU6-1025P-201ENST00000410629 104 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 RPL21P90-201ENST00000415692 466 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AL158156.1-201ENST00000422509 473 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.69□□□□□ -1.66
SF3A1Q15459 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.69□□□□□ -1.66
SF3A1Q15459 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.69□□□□□ -1.66
SF3A1Q15459 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 HSFY6P-201ENST00000445573 403 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AL451050.1-201ENST00000450126 415 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 RPL12P25-201ENST00000455592 494 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 CCDC34P1-201ENST00000507441 517 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.69□□□□□ -1.66
SF3A1Q15459 AC074344.1-201ENST00000512823 224 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 RNU6-928P-201ENST00000516876 104 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AC118273.2-201ENST00000532092 465 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AC011602.1-201ENST00000546484 331 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AC078814.3-201ENST00000553036 491 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.69□□□□□ -1.66
SF3A1Q15459 RNU6-89P-201ENST00000606519 100 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AC006504.8-201ENST00000621046 635 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 AC103858.2-201ENST00000621471 543 ntBASIC4.69□□□□□ -1.66
SF3A1Q15459 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SF3A1Q15459 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.69□□□□□ -1.66
SF3A1Q15459 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SF3A1Q15459 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SF3A1Q15459 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SF3A1Q15459 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SF3A1Q15459 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SF3A1Q15459 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.68□□□□□ -1.66
SF3A1Q15459 RNA5SP295-201ENST00000362655 121 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 RNU6-395P-201ENST00000365662 106 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SF3A1Q15459 MT-TL1-201ENST00000386347 75 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 RNU4-26P-201ENST00000410270 107 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 RPL23AP26-201ENST00000412728 464 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 AC009161.1-201ENST00000417306 376 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 AL358472.1-201ENST00000431295 329 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 RPL7P28-201ENST00000437739 740 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 MTATP6P23-201ENST00000440153 476 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 AC008264.1-201ENST00000447612 367 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.68□□□□□ -1.66
SF3A1Q15459 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.68□□□□□ -1.66
SF3A1Q15459 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC4.68□□□□□ -1.66
SF3A1Q15459 LRRC34P2-201ENST00000514850 553 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.68□□□□□ -1.66
SF3A1Q15459 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.68□□□□□ -1.66
SF3A1Q15459 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SF3A1Q15459 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.68□□□□□ -1.66
SF3A1Q15459 GNRHR2P1-201ENST00000555315 631 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms