Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNU6-17P-201ENST00000384245 107 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 RNU6-18P-201ENST00000384527 107 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
PRKDCP78527 HMGB3P31-201ENST00000413333 595 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC0.73□□□□□ -2.29
PRKDCP78527 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC0.73□□□□□ -2.29
PRKDCP78527 AC016691.1-201ENST00000441321 413 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 HMGN2P21-201ENST00000447764 270 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 AC004022.1-201ENST00000447766 1066 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 RNA5SP233-201ENST00000459153 113 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC0.73□□□□□ -2.29
PRKDCP78527 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
PRKDCP78527 Y_RNA.390-201ENST00000383932 102 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 ARL2BPP3-201ENST00000421226 480 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 AC099548.1-201ENST00000421443 426 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 RPL21P66-201ENST00000426566 466 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 SNORA31.16-201ENST00000516773 139 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 MIR3690-201ENST00000580266 75 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC0.73□□□□□ -2.29
PRKDCP78527 SUMO2P12-201ENST00000405924 140 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 GPM6BP3-201ENST00000442797 145 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 RPS20P10-201ENST00000451209 253 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 ATG12P2-201ENST00000456830 416 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC0.73□□□□□ -2.29
PRKDCP78527 AC005332.10-201ENST00000612725 619 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 AL031601.2-202ENST00000622650 282 ntBASIC0.73□□□□□ -2.29
PRKDCP78527 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC0.72□□□□□ -2.29
PRKDCP78527 RPL31P20-201ENST00000449593 360 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.72□□□□□ -2.29
PRKDCP78527 RPL26P9-201ENST00000457466 433 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 AC105252.1-201ENST00000503089 286 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 AP005597.4-201ENST00000526762 229 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 APOOP3-201ENST00000536787 586 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC0.72□□□□□ -2.29
PRKDCP78527 AC099654.7-201ENST00000635788 2127 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC0.72□□□□□ -2.29
PRKDCP78527 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC0.72□□□□□ -2.29
PRKDCP78527 RNU6-203P-201ENST00000384038 104 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 SNORA1.3-201ENST00000384676 136 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 AC019070.1-201ENST00000415008 1024 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 RFESDP1-201ENST00000422350 461 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.72□□□□□ -2.29
PRKDCP78527 MTCO3P35-201ENST00000485582 781 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
PRKDCP78527 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.72□□□□□ -2.29
PRKDCP78527 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.72□□□□□ -2.29
PRKDCP78527 MTCO3P24-201ENST00000572729 782 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 AC106791.2-201ENST00000604680 391 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.72□□□□□ -2.29
PRKDCP78527 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC0.72□□□□□ -2.29
PRKDCP78527 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC0.72□□□□□ -2.29
PRKDCP78527 TMEM167AP1-201ENST00000423409 219 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 RPS27P1-201ENST00000450552 247 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 KLRA1P-201ENST00000503499 986 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
PRKDCP78527 RPL37P25-201ENST00000507308 276 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC0.72□□□□□ -2.29
PRKDCP78527 AC108157.1-201ENST00000510511 539 ntBASIC0.72□□□□□ -2.29
PRKDCP78527 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC0.72□□□□□ -2.29
PRKDCP78527 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
PRKDCP78527 SNORA67.1-201ENST00000364749 141 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 SNORA14A-201ENST00000364773 135 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 RNU6-1181P-201ENST00000384191 106 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 RPL30P4-201ENST00000429309 333 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 AC015922.2-201ENST00000435593 184 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 NF1P3-201ENST00000457709 450 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC0.71□□□□□ -2.3
PRKDCP78527 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
PRKDCP78527 AL121601.2-201ENST00000438019 707 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 RPL23AP35-201ENST00000451906 501 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC0.71□□□□□ -2.3
PRKDCP78527 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC0.71□□□□□ -2.3
PRKDCP78527 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC0.71□□□□□ -2.3
PRKDCP78527 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
PRKDCP78527 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
PRKDCP78527 SNORD23.1-201ENST00000408212 104 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
PRKDCP78527 FCF1P2-201ENST00000415284 583 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 PGBD4P6-201ENST00000421501 610 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 HMGN2P30-201ENST00000423237 256 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 AC010301.1-201ENST00000473936 355 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC0.71□□□□□ -2.3
PRKDCP78527 AP003717.3-201ENST00000544832 1180 ntBASIC0.71□□□□□ -2.3
PRKDCP78527 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
PRKDCP78527 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC0.71□□□□□ -2.3
PRKDCP78527 RNU6-1180P-201ENST00000364935 107 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 RNU4-72P-201ENST00000410754 173 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.7□□□□□ -2.3
PRKDCP78527 RPS29P23-201ENST00000458635 123 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 AC087343.1-201ENST00000477341 475 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
PRKDCP78527 MRPS17P9-201ENST00000511924 393 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 MIR924-201ENST00000638017 53 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC0.7□□□□□ -2.3
PRKDCP78527 MTCYBP24-201ENST00000420387 1106 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.7□□□□□ -2.3
PRKDCP78527 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC0.7□□□□□ -2.3
PRKDCP78527 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC0.7□□□□□ -2.3
PRKDCP78527 SNORA31.18-201ENST00000517043 134 ntBASIC0.7□□□□□ -2.3
PRKDCP78527 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms