Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 HMGN1P14-201ENST00000412459 517 ntBASIC3.09□□□□□ -1.91
LHX1P48742 RPS15AP12-201ENST00000419498 388 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AC019097.1-201ENST00000424783 735 ntBASIC3.09□□□□□ -1.91
LHX1P48742 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX1P48742 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.09□□□□□ -1.91
LHX1P48742 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.09□□□□□ -1.91
LHX1P48742 CBWD4P-201ENST00000445695 655 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.09□□□□□ -1.91
LHX1P48742 RPL31P3-201ENST00000458430 332 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX1P48742 AC093534.1-201ENST00000504977 132 ntBASIC3.09□□□□□ -1.91
LHX1P48742 MTND5P13-201ENST00000513046 1079 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AC117532.1-201ENST00000514638 323 ntBASIC3.09□□□□□ -1.91
LHX1P48742 SCARNA13-201ENST00000516672 275 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AP003122.4-201ENST00000530980 758 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX1P48742 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.09□□□□□ -1.91
LHX1P48742 AC106782.4-201ENST00000568264 210 ntBASIC3.09□□□□□ -1.91
LHX1P48742 HMGN1P30-201ENST00000589286 268 ntBASIC3.09□□□□□ -1.91
LHX1P48742 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.09□□□□□ -1.91
LHX1P48742 AC008250.2-201ENST00000615261 205 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AC006338.1-201ENST00000618453 749 ntBASIC3.09□□□□□ -1.91
LHX1P48742 AC099654.13-201ENST00000639774 207 ntBASIC3.09□□□□□ -1.91
LHX1P48742 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.09□□□□□ -1.92
LHX1P48742 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
LHX1P48742 AC009487.2-201ENST00000420969 6821 ntBASIC3.08□□□□□ -1.92
LHX1P48742 TPTE2P4-201ENST00000258589 1605 ntBASIC3.08□□□□□ -1.92
LHX1P48742 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.08□□□□□ -1.92
LHX1P48742 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
LHX1P48742 Y_RNA.77-201ENST00000362962 107 ntBASIC3.08□□□□□ -1.92
LHX1P48742 RNU6-1284P-201ENST00000363701 100 ntBASIC3.08□□□□□ -1.92
LHX1P48742 SNORA80A-201ENST00000363922 136 ntBASIC3.08□□□□□ -1.92
LHX1P48742 SNORD116-9-201ENST00000384000 95 ntBASIC3.08□□□□□ -1.92
LHX1P48742 SNORD116-3-201ENST00000384287 95 ntBASIC3.08□□□□□ -1.92
LHX1P48742 SNORD116-1-201ENST00000384335 95 ntBASIC3.08□□□□□ -1.92
LHX1P48742 SNORD116-7-201ENST00000384404 95 ntBASIC3.08□□□□□ -1.92
LHX1P48742 SNORD116-5-201ENST00000384462 95 ntBASIC3.08□□□□□ -1.92
LHX1P48742 MIR325-201ENST00000385260 98 ntBASIC3.08□□□□□ -1.92
LHX1P48742 SNORA40.3-201ENST00000390964 122 ntBASIC3.08□□□□□ -1.92
LHX1P48742 AL645937.1-202ENST00000421799 937 ntBASIC3.08□□□□□ -1.92
LHX1P48742 AC012498.1-201ENST00000424037 437 ntBASIC3.08□□□□□ -1.92
LHX1P48742 TRIAP1P1-201ENST00000427062 225 ntBASIC3.08□□□□□ -1.92
LHX1P48742 AC119618.1-201ENST00000434191 222 ntBASIC3.08□□□□□ -1.92
LHX1P48742 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.08□□□□□ -1.92
LHX1P48742 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.08□□□□□ -1.92
LHX1P48742 AC093156.1-201ENST00000440382 670 ntBASIC3.08□□□□□ -1.92
LHX1P48742 MTND1P12-201ENST00000455231 147 ntBASIC3.08□□□□□ -1.92
LHX1P48742 Y_RNA.672-201ENST00000516289 104 ntBASIC3.08□□□□□ -1.92
LHX1P48742 RPL12P22-201ENST00000519073 490 ntBASIC3.08□□□□□ -1.92
LHX1P48742 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.08□□□□□ -1.92
LHX1P48742 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
LHX1P48742 AC034105.3-201ENST00000565294 442 ntBASIC3.08□□□□□ -1.92
LHX1P48742 AP000860.1-201ENST00000605250 559 ntBASIC3.08□□□□□ -1.92
LHX1P48742 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
LHX1P48742 AL603839.4-201ENST00000624658 1005 ntBASIC3.08□□□□□ -1.92
LHX1P48742 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.08□□□□□ -1.92
LHX1P48742 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
LHX1P48742 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LHX1P48742 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
LHX1P48742 AC004972.1-201ENST00000623934 2209 ntBASIC3.07□□□□□ -1.92
LHX1P48742 MAPK10-362ENST00000641864 4484 ntBASIC3.07□□□□□ -1.92
LHX1P48742 MIR148B-201ENST00000362252 99 ntBASIC3.07□□□□□ -1.92
LHX1P48742 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX1P48742 RNU6-741P-201ENST00000383889 107 ntBASIC3.07□□□□□ -1.92
LHX1P48742 MIR634-201ENST00000385208 97 ntBASIC3.07□□□□□ -1.92
LHX1P48742 RNA5SP38-201ENST00000410750 119 ntBASIC3.07□□□□□ -1.92
LHX1P48742 RPS3AP3-201ENST00000411933 242 ntBASIC3.07□□□□□ -1.92
LHX1P48742 USP9YP36-201ENST00000424581 829 ntBASIC3.07□□□□□ -1.92
LHX1P48742 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX1P48742 AC020550.1-201ENST00000447385 163 ntBASIC3.07□□□□□ -1.92
LHX1P48742 GAPDHP27-201ENST00000447427 1020 ntBASIC3.07□□□□□ -1.92
LHX1P48742 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
LHX1P48742 AL033528.1-201ENST00000453780 140 ntBASIC3.07□□□□□ -1.92
LHX1P48742 snoU109.1-201ENST00000459339 135 ntBASIC3.07□□□□□ -1.92
LHX1P48742 RPL7P5-201ENST00000471472 736 ntBASIC3.07□□□□□ -1.92
LHX1P48742 MTND1P3-201ENST00000484956 952 ntBASIC3.07□□□□□ -1.92
LHX1P48742 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX1P48742 AC006445.2-201ENST00000510061 472 ntBASIC3.07□□□□□ -1.92
LHX1P48742 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.07□□□□□ -1.92
LHX1P48742 RNA5SP367-201ENST00000516557 118 ntBASIC3.07□□□□□ -1.92
LHX1P48742 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.07□□□□□ -1.92
LHX1P48742 AP002453.2-201ENST00000533503 320 ntBASIC3.07□□□□□ -1.92
LHX1P48742 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.07□□□□□ -1.92
LHX1P48742 PIGPP4-201ENST00000584447 307 ntBASIC3.07□□□□□ -1.92
LHX1P48742 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.07□□□□□ -1.92
LHX1P48742 AC024153.1-201ENST00000603103 365 ntBASIC3.07□□□□□ -1.92
LHX1P48742 AC107294.3-201ENST00000609211 526 ntBASIC3.07□□□□□ -1.92
LHX1P48742 MIR7106-201ENST00000612419 65 ntBASIC3.07□□□□□ -1.92
LHX1P48742 OR5H6-203ENST00000642105 978 ntBASIC3.07□□□□□ -1.92
LHX1P48742 AC007785.2-201ENST00000598627 1916 ntBASIC3.07□□□□□ -1.92
LHX1P48742 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
LHX1P48742 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
LHX1P48742 RPL21P3-201ENST00000395517 478 ntBASIC3.06□□□□□ -1.92
LHX1P48742 RNU6-1077P-201ENST00000410506 102 ntBASIC3.06□□□□□ -1.92
LHX1P48742 RNU2-8P-201ENST00000410727 190 ntBASIC3.06□□□□□ -1.92
LHX1P48742 RN7SKP58-201ENST00000411010 305 ntBASIC3.06□□□□□ -1.92
LHX1P48742 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.06□□□□□ -1.92
LHX1P48742 AL589872.1-201ENST00000426602 288 ntBASIC3.06□□□□□ -1.92
LHX1P48742 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms