Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNU1-35P-201ENST00000362782 153 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 RNU5F-7P-201ENST00000363696 115 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 RNA5SP139-201ENST00000364340 117 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 MIR512-1-201ENST00000384913 84 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AL031577.2-201ENST00000404133 280 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AL592148.1-201ENST00000413568 445 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC090960.1-201ENST00000421072 306 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 RPL31P12-201ENST00000422587 358 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 RPL7P46-201ENST00000425129 740 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 MED14P1-201ENST00000430517 648 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 USP12PX-201ENST00000432383 1057 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 LARP1BP3-201ENST00000437229 869 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 UQCRHP3-201ENST00000451503 251 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 MTND4LP3-201ENST00000468320 276 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 RPS20P22-201ENST00000473700 357 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC055855.1-201ENST00000489563 579 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 ATP5F1P5-201ENST00000526403 760 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 MIR3915-201ENST00000578518 97 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 MIR4307-201ENST00000582802 84 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC022146.1-201ENST00000595307 847 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC116312.1-201ENST00000606841 314 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC004696.1-201ENST00000614345 607 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 AC012150.2-201ENST00000621300 544 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 IGHVIII-44-202ENST00000636235 289 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
TNFRSF4P43489 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
TNFRSF4P43489 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
TNFRSF4P43489 GABRG2-229ENST00000641017 3628 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
TNFRSF4P43489 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
TNFRSF4P43489 MIR34A-201ENST00000385130 110 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 U8.14-201ENST00000390843 143 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 AL021407.1-201ENST00000404531 386 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 CCNG1P1-201ENST00000406783 885 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 RN7SKP284-201ENST00000411002 343 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 RPL23AP22-201ENST00000437556 453 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 MTND1P30-201ENST00000441241 901 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 PIGFP3-201ENST00000441918 722 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AP000936.2-201ENST00000447151 681 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 Y_RNA.688-201ENST00000516565 95 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 MIR4435-1-201ENST00000582552 80 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 WISP1-OT1-201ENST00000602893 642 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC097065.2-201ENST00000608159 533 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC090115.4-201ENST00000609970 188 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 AC010680.1-201ENST00000590024 3590 ntBASIC2.82□□□□□ -1.96
TNFRSF4P43489 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.82□□□□□ -1.96
TNFRSF4P43489 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 RNU6-270P-201ENST00000364131 105 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 RNU6-805P-201ENST00000365643 106 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 RNU6-278P-201ENST00000390945 109 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 RNU2-33P-201ENST00000410344 192 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
TNFRSF4P43489 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 AC092047.1-201ENST00000424997 240 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 ARL5AP4-201ENST00000430731 512 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 AC129850.1-201ENST00000436203 508 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 ARPC3P1-201ENST00000437218 533 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 BNIP3P2-201ENST00000441221 577 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 KATNBL1P6-201ENST00000453433 915 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 RPS29P12-201ENST00000460178 152 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 AC126389.1-201ENST00000477436 290 ntBASIC2.81□□□□□ -1.96
TNFRSF4P43489 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.81□□□□□ -1.96
TNFRSF4P43489 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 173 ms