Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AL592221.1-201ENST00000605266 382 ntBASIC2.48□□□□□ -2.01
HOXA9P31269 AC013244.3-201ENST00000605614 388 ntBASIC2.48□□□□□ -2.01
HOXA9P31269 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXA9P31269 AP002782.1-201ENST00000623107 614 ntBASIC2.48□□□□□ -2.01
HOXA9P31269 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.48□□□□□ -2.01
HOXA9P31269 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA9P31269 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
HOXA9P31269 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXA9P31269 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA9P31269 AC005539.1-201ENST00000443768 1479 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA9P31269 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA9P31269 DEFA7P-201ENST00000382676 285 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AC107081.1-201ENST00000414975 361 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 MTATP6P27-201ENST00000416987 621 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 MTCO2P21-201ENST00000419780 677 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA9P31269 BX276092.3-201ENST00000424182 230 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 TXNL1P1-201ENST00000429528 554 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AC004866.2-201ENST00000438285 481 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.47□□□□□ -2.01
HOXA9P31269 ARPC3P5-201ENST00000448802 534 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA9P31269 RPL23AP49-201ENST00000492925 468 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA9P31269 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA9P31269 AC034244.1-201ENST00000507687 207 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA9P31269 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXA9P31269 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXA9P31269 AC011260.1-201ENST00000578420 472 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AC004853.1-201ENST00000604902 698 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AC112220.3-201ENST00000605502 502 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AL136981.2-201ENST00000617319 734 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AL445264.1-201ENST00000621719 171 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AL356585.4-201ENST00000623078 1229 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 AC027309.3-201ENST00000623419 351 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
HOXA9P31269 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA9P31269 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
HOXA9P31269 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
HOXA9P31269 AC069528.2-201ENST00000624849 1991 ntBASIC2.47□□□□□ -2.01
HOXA9P31269 MTND5P6-201ENST00000422338 1798 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA9P31269 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA9P31269 RNU6-777P-201ENST00000364265 104 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 SNORD114-30-201ENST00000364448 72 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 SNORA67.1-201ENST00000364749 141 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
HOXA9P31269 AL356131.1-201ENST00000405826 414 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AL162578.1-201ENST00000406202 378 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 RNU4-26P-201ENST00000410270 107 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA9P31269 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA9P31269 MTCO2P5-201ENST00000422621 426 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA9P31269 OR4K11P-201ENST00000431829 904 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 NDUFB4P6-201ENST00000436819 366 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 ARPC3P1-201ENST00000437218 533 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AC009296.1-201ENST00000443146 155 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA9P31269 AC002381.1-201ENST00000447049 280 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXA9P31269 MTCO3P11-201ENST00000455103 774 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA9P31269 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA9P31269 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA9P31269 AC147055.4-201ENST00000504399 745 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA9P31269 AC105185.1-201ENST00000518705 535 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXA9P31269 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXA9P31269 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.46□□□□□ -2.02
HOXA9P31269 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA9P31269 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA9P31269 MIR4524B-201ENST00000581569 115 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 VN1R82P-201ENST00000601481 356 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AL357080.1-201ENST00000617394 239 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AL596245.1-201ENST00000618994 362 ntBASIC2.46□□□□□ -2.02
HOXA9P31269 AC007336.1-201ENST00000576365 3828 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 AL356473.1-201ENST00000406203 1408 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 MIR6073-201ENST00000352083 89 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 RNU6-28P-201ENST00000362378 107 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 RNU6-1155P-201ENST00000363554 107 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 RNU6-1214P-201ENST00000363650 109 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 SNORA4.1-201ENST00000364263 144 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 RNU1-91P-201ENST00000364746 163 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 RNU6-198P-201ENST00000384258 104 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 MIR135A2-201ENST00000384854 100 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXA9P31269 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXA9P31269 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXA9P31269 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXA9P31269 MTND1P31-201ENST00000449206 961 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXA9P31269 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXA9P31269 USP9YP10-201ENST00000454868 628 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 AC027673.1-201ENST00000456245 405 ntBASIC2.45□□□□□ -2.02
HOXA9P31269 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXA9P31269 snoU13.23-201ENST00000458863 104 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms