Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 OR4K11P-201ENST00000431829 904 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC007677.1-201ENST00000445757 515 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 CYCSP35-201ENST00000451978 304 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 HMGN2P26-201ENST00000463169 339 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC008155.2-201ENST00000464337 397 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC084357.1-201ENST00000473404 255 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RPL31P13-201ENST00000484151 370 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD9P28356 AC068305.1-201ENST00000497406 726 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD9P28356 AC017037.2-201ENST00000513850 890 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD9P28356 SNORA19.2-201ENST00000516013 114 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RNU2-10P-201ENST00000516375 211 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RNU6-1153P-201ENST00000516760 105 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD9P28356 PSMA2P1-201ENST00000526365 646 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD9P28356 AC087241.2-201ENST00000535801 324 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD9P28356 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD9P28356 BNIP3P6-201ENST00000549284 499 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC107016.1-201ENST00000550463 337 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC078814.3-201ENST00000553036 491 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AL442663.2-201ENST00000554385 511 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC012182.1-201ENST00000570133 895 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 OR4K8P-201ENST00000578842 1048 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD9P28356 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD9P28356 AC012468.1-201ENST00000604888 430 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AL121992.2-201ENST00000606262 256 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AL050343.2-201ENST00000607338 280 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC009248.2-201ENST00000619826 254 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 U4.6-201ENST00000621618 127 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AP003355.3-201ENST00000623465 114 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC090617.10-201ENST00000624308 134 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD9P28356 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD9P28356 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD9P28356 AP001486.2-201ENST00000561652 5113 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
HOXD9P28356 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD9P28356 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD9P28356 MTND4P35-201ENST00000604257 1375 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD9P28356 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC244517.1-201ENST00000606030 2086 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 AC027287.1-201ENST00000553115 1453 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 RNA5SP387-201ENST00000364226 106 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 MIR514A2-201ENST00000385131 88 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 MIR514A3-201ENST00000385132 88 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 MIR607-201ENST00000385241 96 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AL122016.1-201ENST00000403365 367 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 RNU6-1148P-201ENST00000410992 104 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 RN7SKP53-201ENST00000411337 315 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 MTND3P8-201ENST00000412909 339 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC009161.1-201ENST00000417306 376 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 MTCYBP8-201ENST00000422855 651 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD9P28356 OR2AS1P-201ENST00000427827 319 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 MTATP6P16-201ENST00000434543 526 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD9P28356 AC016696.1-201ENST00000446949 318 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 U3.44-201ENST00000458938 192 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC006512.1-201ENST00000468816 291 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC025518.1-201ENST00000479856 347 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD9P28356 SCARNA15.1-201ENST00000516384 125 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 RN7SKP219-201ENST00000516825 296 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 RNU7-30P-201ENST00000516835 62 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD9P28356 AP006245.1-201ENST00000522549 120 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXD9P28356 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD9P28356 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD9P28356 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD9P28356 PSMA3P-201ENST00000555485 635 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AL133153.1-201ENST00000557756 303 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD9P28356 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD9P28356 AC078795.3-201ENST00000602913 472 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 AC021646.1-201ENST00000605469 484 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.63□□□□□ -1.83
HOXD9P28356 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD9P28356 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXD9P28356 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD9P28356 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD9P28356 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD9P28356 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD9P28356 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms