Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.57□□□□□ -2.16
HLA-DMBP28068 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.57□□□□□ -2.16
HLA-DMBP28068 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC1.57□□□□□ -2.16
HLA-DMBP28068 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.57□□□□□ -2.16
HLA-DMBP28068 OR11H5P-201ENST00000554039 926 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 AL359212.1-201ENST00000556608 614 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 MIR3124-201ENST00000582636 67 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.57□□□□□ -2.16
HLA-DMBP28068 AC013476.2-201ENST00000614456 459 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 AL136981.2-201ENST00000617319 734 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 AC010975.3-201ENST00000618727 978 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 AC008443.7-201ENST00000622195 246 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 AC110994.2-201ENST00000635481 492 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 MTND1P37-201ENST00000636562 264 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 AC087821.2-201ENST00000637086 450 ntBASIC1.57□□□□□ -2.16
HLA-DMBP28068 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
HLA-DMBP28068 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC005539.1-201ENST00000443768 1479 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HLA-DMBP28068 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
HLA-DMBP28068 RNU6-140P-201ENST00000384566 108 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 MIR17-201ENST00000385012 84 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 SNORA48.3-201ENST00000391081 134 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AL139156.1-201ENST00000412785 841 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 AL109913.1-201ENST00000421173 514 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC027124.2-201ENST00000428249 105 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 MTCYBP15-201ENST00000433123 1127 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 MTCYBP45-201ENST00000435243 565 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AL158053.1-201ENST00000441503 453 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 HMGN1P5-201ENST00000448591 263 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 RPS20P22-201ENST00000473700 357 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 OR4G11P-201ENST00000492842 939 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC026616.1-201ENST00000523157 525 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 RANP3-201ENST00000530970 276 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC010186.2-204ENST00000537668 439 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 AP001542.2-201ENST00000593141 364 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC008749.1-201ENST00000597650 306 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC008121.1-201ENST00000603244 268 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 SNRPGP19-201ENST00000603826 189 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC009314.1-201ENST00000603871 304 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC025588.2-201ENST00000604851 466 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AL450336.1-201ENST00000605180 586 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 Y_RNA.783-201ENST00000613546 102 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC003001.2-201ENST00000616294 831 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AL603758.1-201ENST00000618654 241 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC253576.2-201ENST00000618815 580 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 AC002550.2-201ENST00000621246 394 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 MKKS-204ENST00000639674 192 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.56□□□□□ -2.16
HLA-DMBP28068 MTCO1P4-201ENST00000520516 1409 ntBASIC1.56□□□□□ -2.16
HLA-DMBP28068 SNRPEP3-201ENST00000338402 276 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 SNORA16B-201ENST00000364674 135 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 SNORA67.3-201ENST00000384366 140 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 SNORA64-201ENST00000384674 134 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 AL450338.1-201ENST00000407987 512 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 RNU4-26P-201ENST00000410270 107 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
HLA-DMBP28068 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 BX276092.3-201ENST00000424182 230 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 SDCBPP1-201ENST00000440192 890 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 MTCO3P11-201ENST00000455103 774 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 snoU13.15-201ENST00000459407 104 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 RPS20P20-201ENST00000460498 340 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 UBL5P3-201ENST00000475112 231 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 RPS29P20-201ENST00000489592 171 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC105252.1-201ENST00000503089 286 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC093677.1-201ENST00000514414 678 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 RNA5SP291-201ENST00000517222 105 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 NRON-201ENST00000517270 370 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC044913.1-201ENST00000557200 430 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 MIR3935-201ENST00000583472 104 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC090330.1-201ENST00000588646 764 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 AP000403.1-201ENST00000603349 851 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 MTND4LP5-201ENST00000605152 292 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC007349.4-201ENST00000608114 532 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC107214.2-201ENST00000608204 634 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.55□□□□□ -2.16
HLA-DMBP28068 AL118556.2-201ENST00000614375 824 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 DUXAP9-208ENST00000622815 614 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AC091932.3-201ENST00000624223 323 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 AL159972.1-201ENST00000625150 448 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 MIR7157-201ENST00000635801 60 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms