Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.34□□□□□ -2.19
TNFP01375 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
TNFP01375 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.34□□□□□ -2.19
TNFP01375 RNU6-270P-201ENST00000364131 105 ntBASIC1.34□□□□□ -2.19
TNFP01375 RNU6-203P-201ENST00000384038 104 ntBASIC1.34□□□□□ -2.19
TNFP01375 MIR320A-201ENST00000385302 82 ntBASIC1.34□□□□□ -2.19
TNFP01375 AL136372.1-201ENST00000403060 228 ntBASIC1.34□□□□□ -2.19
TNFP01375 RNU2-68P-201ENST00000410878 191 ntBASIC1.34□□□□□ -2.19
TNFP01375 AL392003.1-201ENST00000434394 243 ntBASIC1.34□□□□□ -2.19
TNFP01375 HSPE1P21-201ENST00000438283 308 ntBASIC1.34□□□□□ -2.19
TNFP01375 RPL23AP6-201ENST00000446637 472 ntBASIC1.34□□□□□ -2.19
TNFP01375 RPL21P134-201ENST00000453468 483 ntBASIC1.34□□□□□ -2.19
TNFP01375 AC107032.1-201ENST00000485945 480 ntBASIC1.34□□□□□ -2.19
TNFP01375 AC107398.1-201ENST00000486904 505 ntBASIC1.34□□□□□ -2.19
TNFP01375 AC055855.1-201ENST00000489563 579 ntBASIC1.34□□□□□ -2.19
TNFP01375 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
TNFP01375 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
TNFP01375 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.34□□□□□ -2.19
TNFP01375 AC008885.2-201ENST00000509506 930 ntBASIC1.34□□□□□ -2.19
TNFP01375 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.34□□□□□ -2.19
TNFP01375 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.34□□□□□ -2.19
TNFP01375 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.34□□□□□ -2.19
TNFP01375 AC126118.1-201ENST00000607744 628 ntBASIC1.34□□□□□ -2.19
TNFP01375 AC012360.2-201ENST00000609349 391 ntBASIC1.34□□□□□ -2.19
TNFP01375 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
TNFP01375 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
TNFP01375 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
TNFP01375 AC010329.5-201ENST00000623497 2174 ntBASIC1.33□□□□□ -2.2
TNFP01375 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
TNFP01375 U8.3-201ENST00000363321 132 ntBASIC1.33□□□□□ -2.2
TNFP01375 SNRPEP2-201ENST00000397592 279 ntBASIC1.33□□□□□ -2.2
TNFP01375 RN7SKP158-201ENST00000410453 326 ntBASIC1.33□□□□□ -2.2
TNFP01375 ISCA1P6-201ENST00000427740 390 ntBASIC1.33□□□□□ -2.2
TNFP01375 AC093106.2-201ENST00000428212 385 ntBASIC1.33□□□□□ -2.2
TNFP01375 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.33□□□□□ -2.2
TNFP01375 AL627224.1-201ENST00000448334 444 ntBASIC1.33□□□□□ -2.2
TNFP01375 RPL23AP3-201ENST00000453844 468 ntBASIC1.33□□□□□ -2.2
TNFP01375 SNORD121B-201ENST00000458838 81 ntBASIC1.33□□□□□ -2.2
TNFP01375 RNU1-98P-201ENST00000458992 160 ntBASIC1.33□□□□□ -2.2
TNFP01375 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.33□□□□□ -2.2
TNFP01375 AC096745.1-201ENST00000509945 370 ntBASIC1.33□□□□□ -2.2
TNFP01375 AC091965.2-201ENST00000512324 613 ntBASIC1.33□□□□□ -2.2
TNFP01375 RNU6-970P-201ENST00000516312 107 ntBASIC1.33□□□□□ -2.2
TNFP01375 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.33□□□□□ -2.2
TNFP01375 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.33□□□□□ -2.2
TNFP01375 AP000254.1-201ENST00000609934 520 ntBASIC1.33□□□□□ -2.2
TNFP01375 uc_338.12-201ENST00000616344 181 ntBASIC1.33□□□□□ -2.2
TNFP01375 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.33□□□□□ -2.2
TNFP01375 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.33□□□□□ -2.2
TNFP01375 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.33□□□□□ -2.2
TNFP01375 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.32□□□□□ -2.2
TNFP01375 RNU1-148P-201ENST00000384472 162 ntBASIC1.32□□□□□ -2.2
TNFP01375 RPL7P27-201ENST00000403775 720 ntBASIC1.32□□□□□ -2.2
TNFP01375 RN7SKP51-201ENST00000410781 304 ntBASIC1.32□□□□□ -2.2
TNFP01375 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC1.32□□□□□ -2.2
TNFP01375 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.32□□□□□ -2.2
TNFP01375 RPL7P29-201ENST00000437151 728 ntBASIC1.32□□□□□ -2.2
TNFP01375 ARL5AP3-201ENST00000439327 386 ntBASIC1.32□□□□□ -2.2
TNFP01375 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.32□□□□□ -2.2
TNFP01375 RNU6-420P-201ENST00000458780 107 ntBASIC1.32□□□□□ -2.2
TNFP01375 RPL30P5-201ENST00000494923 336 ntBASIC1.32□□□□□ -2.2
TNFP01375 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.32□□□□□ -2.2
TNFP01375 SNORA48.10-201ENST00000516965 160 ntBASIC1.32□□□□□ -2.2
TNFP01375 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.32□□□□□ -2.2
TNFP01375 AC118273.2-201ENST00000532092 465 ntBASIC1.32□□□□□ -2.2
TNFP01375 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.32□□□□□ -2.2
TNFP01375 AC010186.2-204ENST00000537668 439 ntBASIC1.32□□□□□ -2.2
TNFP01375 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.32□□□□□ -2.2
TNFP01375 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.32□□□□□ -2.2
TNFP01375 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.32□□□□□ -2.2
TNFP01375 AC012669.1-201ENST00000603209 283 ntBASIC1.32□□□□□ -2.2
TNFP01375 WWP1P1-201ENST00000466609 2769 ntBASIC1.31□□□□□ -2.2
TNFP01375 RNU6-392P-201ENST00000364926 101 ntBASIC1.31□□□□□ -2.2
TNFP01375 RPL23AP29-201ENST00000397284 453 ntBASIC1.31□□□□□ -2.2
TNFP01375 RNU6-1328P-201ENST00000410938 106 ntBASIC1.31□□□□□ -2.2
TNFP01375 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.31□□□□□ -2.2
TNFP01375 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.31□□□□□ -2.2
TNFP01375 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.31□□□□□ -2.2
TNFP01375 OFD1P13Y-201ENST00000431179 1232 ntBASIC1.31□□□□□ -2.2
TNFP01375 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.31□□□□□ -2.2
TNFP01375 C1DP3-201ENST00000455013 423 ntBASIC1.31□□□□□ -2.2
TNFP01375 RNU1-123P-201ENST00000458950 160 ntBASIC1.31□□□□□ -2.2
TNFP01375 snoU109.1-201ENST00000459339 135 ntBASIC1.31□□□□□ -2.2
TNFP01375 AL121769.1-201ENST00000469473 401 ntBASIC1.31□□□□□ -2.2
TNFP01375 RPL31P60-201ENST00000478450 367 ntBASIC1.31□□□□□ -2.2
TNFP01375 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.31□□□□□ -2.2
TNFP01375 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.31□□□□□ -2.2
TNFP01375 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.31□□□□□ -2.2
TNFP01375 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.31□□□□□ -2.2
TNFP01375 MIR4285-201ENST00000581001 85 ntBASIC1.31□□□□□ -2.2
TNFP01375 UBE2L4-201ENST00000587688 464 ntBASIC1.31□□□□□ -2.2
TNFP01375 AC243960.4-201ENST00000600532 288 ntBASIC1.31□□□□□ -2.2
TNFP01375 AC135803.1-201ENST00000608748 565 ntBASIC1.31□□□□□ -2.2
TNFP01375 MIR6078-201ENST00000611069 100 ntBASIC1.31□□□□□ -2.2
TNFP01375 AC073968.1-201ENST00000618594 637 ntBASIC1.31□□□□□ -2.2
TNFP01375 AL589994.2-201ENST00000621124 579 ntBASIC1.31□□□□□ -2.2
TNFP01375 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.31□□□□□ -2.2
TNFP01375 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
TNFP01375 SNORA23-201ENST00000365128 182 ntBASIC1.3□□□□□ -2.2
TNFP01375 PTGES3P2-201ENST00000407942 482 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms