Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL445529.1-201ENST00000398713 389 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AL109755.1-201ENST00000401791 649 ntBASIC2.73□□□□□ -1.97
SDC3O75056 RN7SKP284-201ENST00000411002 343 ntBASIC2.73□□□□□ -1.97
SDC3O75056 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC3O75056 AC109583.1-201ENST00000432156 268 ntBASIC2.73□□□□□ -1.97
SDC3O75056 PIGFP3-201ENST00000441918 722 ntBASIC2.73□□□□□ -1.97
SDC3O75056 BMI1P1-201ENST00000445879 941 ntBASIC2.73□□□□□ -1.97
SDC3O75056 Z96811.1-201ENST00000445880 108 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC3O75056 EEF1B2P7-201ENST00000451177 676 ntBASIC2.73□□□□□ -1.97
SDC3O75056 RPS27P26-201ENST00000494583 239 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC3O75056 AC098799.2-201ENST00000509466 868 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC010486.1-201ENST00000511793 424 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC3O75056 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC3O75056 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC3O75056 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC3O75056 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC3O75056 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.73□□□□□ -1.97
SDC3O75056 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC3O75056 AP000403.1-201ENST00000603349 851 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC091965.4-201ENST00000607691 587 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC107214.2-201ENST00000608204 634 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC004908.2-201ENST00000609090 574 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC103710.4-201ENST00000609301 899 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AL355816.2-201ENST00000610049 647 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC002064.3-201ENST00000623448 346 ntBASIC2.73□□□□□ -1.97
SDC3O75056 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC3O75056 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC3O75056 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SDC3O75056 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC3O75056 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
SDC3O75056 AC092125.1-201ENST00000562568 1995 ntBASIC2.72□□□□□ -1.97
SDC3O75056 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SDC3O75056 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SDC3O75056 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SDC3O75056 RNU6-660P-201ENST00000364566 109 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RNU6-741P-201ENST00000383889 107 ntBASIC2.72□□□□□ -1.97
SDC3O75056 MIR767-201ENST00000390228 109 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RPL21P75-201ENST00000396599 483 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RPL21P28-201ENST00000401418 483 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AL592114.1-201ENST00000403842 483 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RNA5SP508-201ENST00000411327 119 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.72□□□□□ -1.97
SDC3O75056 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.72□□□□□ -1.97
SDC3O75056 OOSP1P1-201ENST00000423265 274 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC3O75056 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC3O75056 MTCYBP39-201ENST00000437562 491 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AL714022.1-201ENST00000439897 151 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RPL39P40-201ENST00000445481 146 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AP000936.2-201ENST00000447151 681 ntBASIC2.72□□□□□ -1.97
SDC3O75056 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC3O75056 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.72□□□□□ -1.97
SDC3O75056 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.72□□□□□ -1.97
SDC3O75056 RPL21P39-201ENST00000463605 483 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC116337.2-201ENST00000477662 156 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RPL21P93-201ENST00000480465 489 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC087190.1-201ENST00000484462 480 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RPL23AP41-201ENST00000484754 458 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC055855.1-201ENST00000489563 579 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC093591.1-201ENST00000491435 481 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RPL21P16-201ENST00000495531 483 ntBASIC2.72□□□□□ -1.97
SDC3O75056 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC3O75056 MTND1P22-201ENST00000510572 951 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.72□□□□□ -1.97
SDC3O75056 RNU4-29P-201ENST00000515943 174 ntBASIC2.72□□□□□ -1.97
SDC3O75056 RN7SKP43-201ENST00000516173 320 ntBASIC2.72□□□□□ -1.97
SDC3O75056 NRON-201ENST00000517270 370 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC087373.1-201ENST00000524920 491 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC3O75056 LRRC34P1-201ENST00000542742 915 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.72□□□□□ -1.97
SDC3O75056 TRAV28-201ENST00000557548 323 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AL133153.1-201ENST00000557756 303 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC234778.2-201ENST00000566241 354 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.72□□□□□ -1.97
SDC3O75056 MTCO3P13-201ENST00000577757 781 ntBASIC2.72□□□□□ -1.97
SDC3O75056 TPMTP1-201ENST00000592307 737 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC002545.1-201ENST00000592511 181 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC018638.7-201ENST00000605836 1114 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC004223.4-201ENST00000612426 332 ntBASIC2.72□□□□□ -1.97
SDC3O75056 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SDC3O75056 AC107871.2-201ENST00000612894 502 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC004696.1-201ENST00000614345 607 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC131159.1-201ENST00000621854 213 ntBASIC2.72□□□□□ -1.97
SDC3O75056 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
SDC3O75056 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SDC3O75056 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.72□□□□□ -1.97
SDC3O75056 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SDC3O75056 AL035425.3-201ENST00000564206 4996 ntBASIC2.72□□□□□ -1.97
SDC3O75056 AC008669.1-201ENST00000565823 2178 ntBASIC2.71□□□□□ -1.97
SDC3O75056 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SDC3O75056 Y_RNA.97-201ENST00000363094 102 ntBASIC2.71□□□□□ -1.98
SDC3O75056 TXNP7-201ENST00000406296 293 ntBASIC2.71□□□□□ -1.98
SDC3O75056 RN7SKP140-201ENST00000411196 284 ntBASIC2.71□□□□□ -1.98
SDC3O75056 UBE2FP1-201ENST00000416536 447 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AL513477.1-202ENST00000417061 214 ntBASIC2.71□□□□□ -1.98
SDC3O75056 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 163.5 ms