Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 USP12PX-201ENST00000432383 1057 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 TBCAP1-201ENST00000436520 327 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 RPL26P6-201ENST00000440913 438 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 CEACAMP4-201ENST00000457676 421 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 MRPS17P3-201ENST00000465453 385 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AL049830.2-201ENST00000480072 201 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC092451.1-201ENST00000480211 153 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC116562.3-201ENST00000506136 177 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 HMGN1P11-201ENST00000508668 303 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 RNU1-95P-201ENST00000516357 160 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 RNU1-128P-201ENST00000516704 160 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AF235103.2-201ENST00000525753 346 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC068587.5-201ENST00000528506 175 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AP005435.4-201ENST00000529514 284 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 MIR3186-201ENST00000577404 85 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC024940.5-201ENST00000622889 474 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 FRG1KP-201ENST00000623592 341 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 MTND5P1-201ENST00000445440 1375 ntBASIC3.71□□□□□ -1.82
VPS4AQ9UN37 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4AQ9UN37 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RNU6-213P-201ENST00000384051 104 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 SNORA36C-201ENST00000384289 132 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 MIR30B-201ENST00000384850 88 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 MIR607-201ENST00000385241 96 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 MT-TL1-201ENST00000386347 75 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 HMGN2P8-201ENST00000391458 268 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AL136116.1-201ENST00000403591 381 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RNA5SP118-201ENST00000410385 109 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 Z92545.1-201ENST00000411782 234 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RPS29P4-201ENST00000414733 161 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC073415.1-201ENST00000449240 153 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RNU7-63P-201ENST00000459054 62 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RPL9P32-201ENST00000464118 620 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC233702.1-201ENST00000482905 502 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RN7SL323P-201ENST00000494712 295 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC117522.1-201ENST00000509821 380 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 OR5D17P-201ENST00000531492 978 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AL138976.2-201ENST00000563989 694 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC012531.5-201ENST00000611375 151 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RMST_3.1-201ENST00000611651 109 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC244205.2-202ENST00000635781 342 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 AC024614.3-201ENST00000637860 256 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 CASC19-280ENST00000642102 1351 ntBASIC3.7□□□□□ -1.82
VPS4AQ9UN37 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4AQ9UN37 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS4AQ9UN37 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS4AQ9UN37 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4AQ9UN37 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4AQ9UN37 AP004289.2-201ENST00000444413 1457 ntBASIC3.69□□□□□ -1.82
VPS4AQ9UN37 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.69□□□□□ -1.82
VPS4AQ9UN37 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4AQ9UN37 RNU5E-4P-201ENST00000364931 120 ntBASIC3.69□□□□□ -1.82
VPS4AQ9UN37 RNU6-996P-201ENST00000365438 107 ntBASIC3.69□□□□□ -1.82
VPS4AQ9UN37 SNORA5A-201ENST00000384111 134 ntBASIC3.69□□□□□ -1.82
VPS4AQ9UN37 NDUFB4P4-201ENST00000404822 243 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms