Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 TBCAP3-201ENST00000512475 312 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 Y_RNA.708-201ENST00000516950 96 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC087854.1-201ENST00000519706 414 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 MIR6128-201ENST00000615528 109 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 RNU6-1115P-201ENST00000362490 106 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 RNU6-1106P-201ENST00000390845 107 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 SNORA11.2-201ENST00000408318 127 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 RPL7AP73-201ENST00000413490 353 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 AF213884.1-201ENST00000488102 463 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 RPL23AP97-201ENST00000568955 471 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 MIR4458-201ENST00000578872 75 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 SNORA51-201ENST00000606420 132 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 AC091953.5-201ENST00000622919 233 ntBASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC87Q9NVE4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.4□□□□□ -1.55
CCDC87Q9NVE4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC87Q9NVE4 AL592182.3-201ENST00000642132 3304 ntBASIC5.4□□□□□ -1.55
CCDC87Q9NVE4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 Y_RNA.5-201ENST00000362334 102 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 RNU6-1309P-201ENST00000363305 108 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 Y_RNA.148-201ENST00000363557 117 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 RNU6-1032P-201ENST00000384100 107 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AL590704.1-201ENST00000402856 794 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 RPS12P24-201ENST00000412619 387 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AL589765.3-201ENST00000446084 462 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 SNORA25.10-201ENST00000515926 124 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 RNU6-323P-201ENST00000521915 107 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AL117187.1-201ENST00000555482 181 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AC007619.2-201ENST00000605743 379 ntBASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC87Q9NVE4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 Y_RNA.252-201ENST00000364556 101 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 MIR483-201ENST00000385070 76 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 RNU6-985P-201ENST00000410182 104 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 AC093578.1-201ENST00000415219 368 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 RPL21P109-201ENST00000422213 475 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 BTF3P15-201ENST00000455606 336 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 MIR2053-201ENST00000459295 91 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 SNORA31.3-201ENST00000516029 96 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 RNU6-1332P-201ENST00000516666 104 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 RNU6-840P-201ENST00000517275 65 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 AC126177.3-201ENST00000551839 688 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 MIR7151-201ENST00000617477 60 ntBASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms