Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNA5SP515-201ENST00000364570 118 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 SNORA16.2-201ENST00000390991 127 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 RNU6-817P-201ENST00000391083 104 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AL139039.1-201ENST00000401900 692 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AL356967.1-201ENST00000406305 431 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 RNA5SP111-201ENST00000411386 101 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 BX682237.1-201ENST00000415016 335 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AL354751.2-201ENST00000415471 210 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 HMGB1P37-201ENST00000439613 609 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 HMGN2P21-201ENST00000447764 270 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AL121877.1-201ENST00000453704 622 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 Y_RNA.632-201ENST00000459189 102 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 HSPE1P6-201ENST00000479457 291 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC108860.1-201ENST00000484521 383 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 VN1R104P-201ENST00000505115 1009 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC026726.1-201ENST00000512859 601 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 RN7SKP21-201ENST00000516503 220 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 RNU6-273P-201ENST00000516937 96 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 OR8R1P-201ENST00000543943 764 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 YPEL5P3-201ENST00000547227 352 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 BDH2P1-201ENST00000602288 736 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AL606490.9-201ENST00000603331 271 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC008638.3-201ENST00000603341 463 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC174048.1-201ENST00000603389 144 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AL158196.1-201ENST00000616786 434 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AL731566.2-201ENST00000618971 317 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 AC004925.1-201ENST00000624256 2706 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 HSPA8P4-201ENST00000511877 1920 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 LINC02471-203ENST00000641941 4752 ntBASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCIF1Q9H4Z3 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 MIR448-201ENST00000362131 111 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 RNU6-1279P-201ENST00000383917 103 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 RNA5SP219-201ENST00000390940 113 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC018644.1-201ENST00000429934 551 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC011742.1-201ENST00000431448 434 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 DYNLL1P5-201ENST00000467158 270 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC068587.1-201ENST00000483613 781 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AP001086.1-201ENST00000494882 321 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 RNU6-189P-201ENST00000516120 101 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC090136.1-201ENST00000520009 240 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC087369.1-201ENST00000520775 996 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AP000889.2-201ENST00000532684 490 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AL139395.1-201ENST00000603662 160 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC113139.1-201ENST00000605049 239 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 uc_338.15-201ENST00000615470 191 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AL359547.2-201ENST00000615810 418 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AC103705.1-201ENST00000619013 241 ntBASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.29□□□□□ -1.72
PCIF1Q9H4Z3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 RN7SKP227-201ENST00000364445 330 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 RNU6-715P-201ENST00000365204 103 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 SNORD70.1-201ENST00000391007 85 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AL591212.2-201ENST00000433923 257 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC083863.1-201ENST00000438811 231 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 MLLT10P2-201ENST00000506434 249 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms