Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.74□□□□□ -1.97
LIME1Q9H400 MTCO2P16-201ENST00000436962 677 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 MTND4P32-201ENST00000437189 1237 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 RPL17P49-201ENST00000443728 411 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 RAP1BP2-201ENST00000478270 544 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 KCTD9P5-201ENST00000504141 1170 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 NRON-201ENST00000517270 370 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC007115.1-201ENST00000546853 234 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 GTF3AP2-201ENST00000557014 266 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.74□□□□□ -1.97
LIME1Q9H400 MIR2682-201ENST00000580305 110 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 MIR3945-201ENST00000581853 98 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC005771.1-201ENST00000585581 349 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC073544.2-201ENST00000601155 540 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC121334.2-201ENST00000605387 271 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC245008.1-201ENST00000608123 476 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC099778.2-201ENST00000610904 211 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC131902.3-201ENST00000611767 581 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC091304.9-201ENST00000612091 226 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 uc_338.1-201ENST00000612113 180 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AC108479.2-201ENST00000617314 601 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC048344.4-201ENST00000619744 527 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 AL079305.1-201ENST00000623159 3008 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.74□□□□□ -1.97
LIME1Q9H400 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LIME1Q9H400 AL136164.4-201ENST00000625013 2135 ntBASIC2.74□□□□□ -1.97
LIME1Q9H400 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
LIME1Q9H400 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.73□□□□□ -1.97
LIME1Q9H400 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.73□□□□□ -1.97
LIME1Q9H400 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
LIME1Q9H400 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.73□□□□□ -1.97
LIME1Q9H400 RNU6-1284P-201ENST00000363701 100 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 Y_RNA.553-201ENST00000384670 102 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 RPL21P3-201ENST00000395517 478 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 RPL21P24-201ENST00000413752 448 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AL139413.1-201ENST00000421309 217 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.73□□□□□ -1.97
LIME1Q9H400 TAAR7P-201ENST00000436141 242 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.73□□□□□ -1.97
LIME1Q9H400 CST9LP2-201ENST00000437612 320 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.73□□□□□ -1.97
LIME1Q9H400 AL031667.1-201ENST00000440222 725 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.73□□□□□ -1.97
LIME1Q9H400 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.73□□□□□ -1.97
LIME1Q9H400 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.73□□□□□ -1.97
LIME1Q9H400 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.73□□□□□ -1.97
LIME1Q9H400 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.73□□□□□ -1.97
LIME1Q9H400 SSXP1-201ENST00000453640 473 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 MTCO2P18-201ENST00000457151 658 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC146507.2-201ENST00000460608 476 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 MTCO2P29-201ENST00000465212 189 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AL049714.1-201ENST00000466686 347 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 RN7SL330P-201ENST00000469709 307 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.73□□□□□ -1.97
LIME1Q9H400 MTND5P13-201ENST00000513046 1079 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LIME1Q9H400 AC091826.1-201ENST00000514065 313 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC022447.1-201ENST00000515358 464 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC245166.1-201ENST00000521012 253 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AP003181.2-201ENST00000528941 181 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.73□□□□□ -1.97
LIME1Q9H400 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.73□□□□□ -1.97
LIME1Q9H400 AL845331.3-202ENST00000562856 261 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 RSL24D1P11-201ENST00000591045 491 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 BNIP3P8-201ENST00000597863 560 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC013553.2-201ENST00000604244 589 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC087752.4-201ENST00000605911 462 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC009570.1-201ENST00000609599 745 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC090970.3-201ENST00000612566 866 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AL157817.1-201ENST00000614264 790 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 SNHG22-203ENST00000617833 660 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AC009509.4-201ENST00000619202 509 ntBASIC2.73□□□□□ -1.97
LIME1Q9H400 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
LIME1Q9H400 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LIME1Q9H400 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.73□□□□□ -1.97
LIME1Q9H400 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
LIME1Q9H400 OR4G2P-202ENST00000641004 1759 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 GABRG2-229ENST00000641017 3628 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 RNA5SP295-201ENST00000362655 121 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 TXNP7-201ENST00000406296 293 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 FCF1P10-201ENST00000407590 479 ntBASIC2.72□□□□□ -1.97
LIME1Q9H400 RPS3AP3-201ENST00000411933 242 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms