Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AC022018.1-201ENST00000430685 241 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC005094.1-201ENST00000440420 368 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 MTCO1P19-201ENST00000443487 500 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 RPL17P49-201ENST00000443728 411 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 RPS27P29-201ENST00000463110 252 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC008481.1-201ENST00000463278 396 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 RAP1BP2-201ENST00000478270 544 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 LARP1BP2-201ENST00000486594 519 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC097462.2-201ENST00000504623 481 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 CBX3P3-201ENST00000508108 532 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 ATP5F1P5-201ENST00000526403 760 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC093012.1-202ENST00000549403 582 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 RPL21P5-201ENST00000554662 472 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AL355836.1-201ENST00000555951 870 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 AF038458.1-201ENST00000588406 262 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC064872.1-201ENST00000604823 1072 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC106900.2-201ENST00000604994 317 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AP000254.1-201ENST00000609934 520 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 SDR42E1P2-201ENST00000614861 481 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 XIST_intron.1-201ENST00000619444 68 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AL603839.4-201ENST00000624658 1005 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC090582.1-201ENST00000636321 199 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP44Q9H0E7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP44Q9H0E7 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP44Q9H0E7 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 RNU1-35P-201ENST00000362782 153 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 RNU4-24P-201ENST00000364565 139 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 SNORA9.2-201ENST00000365361 133 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 SNORA1.3-201ENST00000384676 136 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 CCNG1P1-201ENST00000406783 885 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 HMGN1P14-201ENST00000412459 517 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 RPL21P24-201ENST00000413752 448 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 USP9YP13-201ENST00000417797 480 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 RPL21P40-201ENST00000428586 483 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AL353706.1-201ENST00000436728 494 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 RPS29P6-201ENST00000438196 145 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 MTND2P24-201ENST00000453434 806 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 MTND4P2-201ENST00000507767 1203 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC022447.1-201ENST00000515358 464 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 SCARNA13-201ENST00000516672 275 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC123904.2-201ENST00000548059 300 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC024909.2-201ENST00000553035 286 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AL157394.1-201ENST00000562983 1224 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC006362.1-201ENST00000567392 174 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC106782.4-201ENST00000568264 210 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC109347.2-201ENST00000610220 349 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AC011939.3-201ENST00000613686 466 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 AP001506.1-201ENST00000615444 211 ntBASIC3.61□□□□□ -1.83
USP44Q9H0E7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.61□□□□□ -1.83
USP44Q9H0E7 MIR514A1-201ENST00000385133 98 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 TMEM167AP1-201ENST00000423409 219 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.6□□□□□ -1.83
USP44Q9H0E7 SETP5-201ENST00000437270 562 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.6□□□□□ -1.83
USP44Q9H0E7 RABEPKP1-201ENST00000440529 1026 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 USP9YP29-201ENST00000445112 563 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.6□□□□□ -1.83
USP44Q9H0E7 RNU6-956P-201ENST00000458868 103 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.6□□□□□ -1.83
USP44Q9H0E7 RPL30P5-201ENST00000494923 336 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.6□□□□□ -1.83
USP44Q9H0E7 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP44Q9H0E7 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.6□□□□□ -1.83
USP44Q9H0E7 RN7SKP132-201ENST00000516001 208 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 Y_RNA.672-201ENST00000516289 104 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.6□□□□□ -1.83
USP44Q9H0E7 AC079600.2-201ENST00000550076 130 ntBASIC3.6□□□□□ -1.83
USP44Q9H0E7 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms