Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC010424.1-201ENST00000506336 297 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 MTND4P2-201ENST00000507767 1203 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 RPL23AP94-201ENST00000512518 302 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 Y_RNA.672-201ENST00000516289 104 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC009812.2-201ENST00000517657 457 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AL163153.1-201ENST00000554223 283 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 MIR4293-201ENST00000584305 78 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC108747.1-201ENST00000609508 535 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC100793.4-201ENST00000613683 429 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 SNHG22-203ENST00000617833 660 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 TEX21P-201ENST00000447107 1476 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 Y_RNA.51-201ENST00000362725 102 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 RNU4-1-201ENST00000363925 141 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 SNORA71.1-201ENST00000364523 117 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AP002088.1-201ENST00000382740 395 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 SNORA40.3-201ENST00000390964 122 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 U3.42-201ENST00000408746 214 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 RNA5SP107-201ENST00000411358 122 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 UBE2FP1-201ENST00000416536 447 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AC137499.1-201ENST00000427602 88 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AC010153.1-201ENST00000432862 727 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AC107083.1-201ENST00000439643 279 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AC068724.1-201ENST00000487100 792 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 MIR4298-201ENST00000584380 73 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 NRBF2P1-201ENST00000587407 859 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 HMGN1P30-201ENST00000589286 268 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AC008277.2-201ENST00000605196 797 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 RN7SKP299-201ENST00000606679 301 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AL391813.2-201ENST00000609113 322 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AP000254.1-201ENST00000609934 520 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AC011939.3-201ENST00000613686 466 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AC004696.1-201ENST00000614345 607 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 FARSBP1-201ENST00000435808 1778 ntBASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC3Q9BQI4 AL137003.2-201ENST00000606924 2538 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 SNORA5B-201ENST00000363786 132 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 SNORA75-201ENST00000384158 137 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 RNU6-297P-201ENST00000384636 107 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 SNORD15B-201ENST00000384714 146 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 MIR514A1-201ENST00000385133 98 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 MRPL42P2-201ENST00000403169 426 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 RNA5SP31-201ENST00000411144 127 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 RPL21P24-201ENST00000413752 448 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 CDK8P2-201ENST00000415020 547 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 MORF4L1P6-201ENST00000418771 268 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 RPL31P12-201ENST00000422587 358 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC019097.1-201ENST00000424783 735 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC008850.1-201ENST00000427546 362 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 BX679664.1-201ENST00000434429 253 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC009961.2-201ENST00000435771 251 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AL353706.1-201ENST00000436728 494 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 HMGN2P20-201ENST00000437531 273 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 USP9YP15-201ENST00000442391 422 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 MTCO1P19-201ENST00000443487 500 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 USP9YP29-201ENST00000445112 563 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 RPS20P20-201ENST00000460498 340 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC008481.1-201ENST00000463278 396 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 RN7SKP272-201ENST00000516988 232 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 RNU6-64P-201ENST00000517119 105 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 NRON-201ENST00000517270 370 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 DUXAP4-201ENST00000603046 613 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AL358072.1-201ENST00000604156 575 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC106900.2-201ENST00000604994 317 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AL033523.1-201ENST00000605153 153 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AL591516.1-201ENST00000611326 274 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC090132.2-201ENST00000615881 347 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 PISRT1-201ENST00000626175 531 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC073476.4-201ENST00000628409 72 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AC090582.1-201ENST00000636321 199 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 MIR622-201ENST00000638396 96 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 SRP72P2-201ENST00000344851 1979 ntBASIC3.03□□□□□ -1.92
CCDC3Q9BQI4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms