Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC079780.1-201ENST00000428259 207 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.14□□□□□ -1.91
USP28Q96RU2 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.14□□□□□ -1.91
USP28Q96RU2 FAM103A2P-201ENST00000444122 354 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 Z82190.1-201ENST00000454534 490 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC090525.1-201ENST00000479116 478 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 COX7A2P2-201ENST00000505291 250 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.14□□□□□ -1.91
USP28Q96RU2 RNU6-714P-201ENST00000516963 103 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 RN7SKP57-201ENST00000517248 293 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.14□□□□□ -1.91
USP28Q96RU2 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.14□□□□□ -1.91
USP28Q96RU2 FAM60BP-201ENST00000578364 658 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.14□□□□□ -1.91
USP28Q96RU2 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.14□□□□□ -1.91
USP28Q96RU2 AC004853.1-201ENST00000604902 698 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AL596245.1-201ENST00000618994 362 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
USP28Q96RU2 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
USP28Q96RU2 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 AC092435.3-201ENST00000565538 3654 ntBASIC3.14□□□□□ -1.91
USP28Q96RU2 RNU6-173P-201ENST00000364215 104 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 RNU6-1027P-201ENST00000383998 107 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 UBA52P6-201ENST00000399822 382 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 RNU2-47P-201ENST00000410649 186 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 HMGN1P14-201ENST00000412459 517 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.13□□□□□ -1.91
USP28Q96RU2 MTCO1P21-201ENST00000416634 589 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 EZH2P1-201ENST00000431167 291 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.13□□□□□ -1.91
USP28Q96RU2 MTCO3P5-201ENST00000433620 714 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 RPS20P5-201ENST00000434808 360 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 ARL2BPP4-201ENST00000506854 471 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.13□□□□□ -1.91
USP28Q96RU2 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.13□□□□□ -1.91
USP28Q96RU2 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.13□□□□□ -1.91
USP28Q96RU2 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.13□□□□□ -1.91
USP28Q96RU2 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.13□□□□□ -1.91
USP28Q96RU2 AC010653.1-201ENST00000571108 881 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.13□□□□□ -1.91
USP28Q96RU2 SEPT7P9-203ENST00000604116 343 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 MIR92B-201ENST00000607575 96 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC006566.1-201ENST00000608943 513 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AL391813.2-201ENST00000609113 322 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC096577.2-201ENST00000611455 153 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC005332.10-201ENST00000612725 619 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC079597.1-201ENST00000624306 508 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 AC099654.13-201ENST00000639774 207 ntBASIC3.13□□□□□ -1.91
USP28Q96RU2 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
USP28Q96RU2 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.12□□□□□ -1.91
USP28Q96RU2 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.12□□□□□ -1.91
USP28Q96RU2 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP28Q96RU2 AL161781.1-201ENST00000354277 403 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 RNU4-91P-201ENST00000364778 135 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 CD24P4-201ENST00000382840 243 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 SNORA1.3-201ENST00000384676 136 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 SNORA40.3-201ENST00000390964 122 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 CCNG1P1-201ENST00000406783 885 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 AC078974.1-201ENST00000411597 223 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 MTCO3P41-201ENST00000414801 328 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 USP9YP13-201ENST00000417797 480 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.12□□□□□ -1.91
USP28Q96RU2 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.12□□□□□ -1.91
USP28Q96RU2 AL590664.1-201ENST00000448065 339 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 USP9YP12-201ENST00000450481 570 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 AC104563.1-201ENST00000476147 376 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.12□□□□□ -1.91
USP28Q96RU2 HIGD1AP13-201ENST00000509878 289 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP28Q96RU2 AC017037.2-201ENST00000513850 890 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP28Q96RU2 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.12□□□□□ -1.91
USP28Q96RU2 AP003497.1-201ENST00000528472 562 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 AP003122.4-201ENST00000530980 758 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.12□□□□□ -1.91
USP28Q96RU2 AC079600.2-201ENST00000550076 130 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.12□□□□□ -1.91
USP28Q96RU2 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.12□□□□□ -1.91
USP28Q96RU2 AC087683.1-201ENST00000591187 441 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 AL442067.2-201ENST00000614033 363 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.12□□□□□ -1.91
USP28Q96RU2 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.12□□□□□ -1.91
USP28Q96RU2 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP28Q96RU2 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.12□□□□□ -1.91
USP28Q96RU2 AC011460.1-201ENST00000636268 1834 ntBASIC3.12□□□□□ -1.91
USP28Q96RU2 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
USP28Q96RU2 Y_RNA.41-201ENST00000362646 102 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 Y_RNA.46-201ENST00000362695 102 ntBASIC3.11□□□□□ -1.91
USP28Q96RU2 RNU1-112P-201ENST00000364401 164 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms